7BKF

Crystal structure of WT BA3943, a CE4 family pseudoenzyme from Bacillus Anthracis

• PDB DOI: https://doi.org/10.2210/pdb7BKF/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Bacillus anthracis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-01-15 Released: 2021-05-19 
• Deposition Author(s): Molfetas, A., Kokkinidis, M.
• Funding Organization(s): European Union (EU)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.14 Å
• R-Value Free: 0.205 
• R-Value Work: 0.167 
• R-Value Observed: 0.168 

Starting Model: experimental

Literature

The resurrection of a dead enzyme

Molfetas, A., Tomatsidou, N., Bouriotis, V., Kokkinidis, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content

• Total Structure Weight: 33.42 kDa 
• Atom Count: 2,627 
• Modelled Residue Count: 281 
• Deposited Residue Count: 282 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative polysaccharide deacetylase	A	282	Bacillus anthracis	Mutation(s): 0  Gene Names: ylxY, BA_3943, A9486_19545, BASH2_01993, COL95_11150
UniProt
Find proteins for A0A6L7H2K2 (Bacillus anthracis) Explore A0A6L7H2K2  Go to UniProtKB:  A0A6L7H2K2

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TRS	F [auth A]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O
SO4	B [auth A], C [auth A], D [auth A], E [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.14 Å
• R-Value Free: 0.205 
• R-Value Work: 0.167 
• R-Value Observed: 0.168 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.441	α = 90
b = 58.614	β = 90
c = 78.993	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
pointless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2021-05-19 
Deposition Author(s): Molfetas, A., Kokkinidis, M.

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Funding Organization	Location	Grant Number
European Union (EU)	Greece	316223

Revision History  

• Version 1.0: 2021-05-19
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Database references, Refinement description