7BIB

Crystal structure of human GSTA1-1 bound to the glutathione adduct of hexyl-isothiocyanate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.219 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Role of human salivary enzymes in bitter taste perception.

Schwartz, M.Brignot, H.Feron, G.Hummel, T.Zhu, Y.von Koskull, D.Heydel, J.M.Lirussi, F.Canon, F.Neiers, F.

(2022) Food Chem 386: 132798-132798

  • DOI: https://doi.org/10.1016/j.foodchem.2022.132798
  • Primary Citation of Related Structures:  
    7BIA, 7BIB, 7BIC

  • PubMed Abstract: 

    The molecules that elicit taste sensation are perceived by interacting with the taste receptors located in the taste buds. Enzymes involved in the detoxification processes are found in saliva as well as in type II cells, where taste receptors, including bitter taste receptors, are located. These enzymes are known to interact with a large panel of molecules. To explore a possible link between these enzymes and bitter taste perception, we demonstrate that salivary glutathione transferases (GSTA1 and GSTP1) can metabolize bitter molecules. To support these abilities, we solve three X-ray structures of these enzymes in complexes with isothiocyanates. Salivary GSTA1 and GSTP1 are expressed in a large panel of subjects. Additionally, GSTA1 levels in the saliva of people suffering from taste disorders are significantly lower than those in the saliva of the control group.


  • Organizational Affiliation

    Université de Bourgogne-Franche Comté, CNRS, INRAE, Centre des Sciences du Goût et de l'Alimentation (CSGA), Dijon, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase A1
A, B
222Homo sapiensMutation(s): 0 
Gene Names: GSTA1
EC: 2.5.1.18 (PDB Primary Data), 1.11.1 (PDB Primary Data), 5.3.3 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P08263 (Homo sapiens)
Explore P08263 
Go to UniProtKB:  P08263
PHAROS:  P08263
GTEx:  ENSG00000243955 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08263
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
TZ8 (Subject of Investigation/LOI)
Query on TZ8

Download Ideal Coordinates CCD File 
C [auth A],
D [auth B]
(2~{R})-2-azanyl-5-[[(2~{R})-3-(hexylcarbamothioylsulfanyl)-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid
C17 H30 N4 O6 S2
XOLGYJMCQDFBBU-NEPJUHHUSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.219 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 99.638α = 90
b = 93.222β = 93.185
c = 51.524γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
pointlessdata reduction
pointlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)France--

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-02
    Type: Initial release
  • Version 1.1: 2022-09-14
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description