7BES

CryoEM structure of Mycobacterium tuberculosis UMP Kinase (UMPK) in complex with UDP and UTP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.85 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Insight into the natural negative effector binding site of UMP kinase from Gram-positive bacteria, a promising antibacterial target

Walter, P.Mechaly, M.Bous, J.Haouz, A.England, P.Lai-Kee-Him, J.Hoos, S.Trapani, S.Bron, P.Lagesse, G.Munier-Lehmann, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Uridylate kinaseA, B, C281Mycobacterium tuberculosisMutation(s): 0 
Gene Names: 
pyrHDSI38_19350E5M52_15045ERS007661_01512ERS007665_01956ERS007670_03545ERS007679_03743ERS007681_04226ERS007703_02851ERS007741_01760ERS013471_00404ERS023446_00770ERS024276_02256ERS027646_01450ERS027661_02116ERS075361_01995ERS094182_02076F6W99_01494FRD82_11895SAMEA2683035_02116E5M05_16465ERS007683_03350ERS013440_00236FPJ30_15750FPJ31_15895FPJ32_15740FPJ33_15790FPJ34_15745FPJ35_15855FPJ36_15750FPJ37_15730FPJ38_15790FPJ39_15740FPJ41_15755FPJ42_15665FPJ43_15730FPJ44_15850FPJ45_15745FPJ46_15740FPJ47_15755FPJ48_15755FPJ49_15730FPJ50_15715FPJ51_15710FPJ52_15815FPJ53_15755FPJ54_15745FPJ55_15900FPJ56_15690FPJ57_15740FPJ58_15730FPJ59_15750FPJ60_15735FPJ61_15745FPJ62_15705FPJ63_15800FPJ64_15855FPJ65_15760FPJ66_15735FPJ67_15795FPJ69_15795FPJ70_15795FPJ71_15790FPJ72_14505FPJ73_15705FPJ76_15710FPJ77_15760FPJ78_15745FPJ79_15710FPJ80_15830FPJ81_15895FPJ82_15950FPJ83_05830FPJ84_15700FPJ85_05830FPJ86_05830FPJ87_05830FPJ88_15695FPJ89_15780FPJ90_15710FPJ91_15785FPJ92_15725FPJ93_15710FPJ94_14500FPJ95_15720FPJ96_15890FPJ97_15770FPJ98_15760FPJ99_15755FPK00_15665FPK01_15685FPK02_15680FPK03_15700FPK04_15700FPK05_15785FPK06_15665FPK07_15695FPK08_15870FPK09_15860FPK10_14485FPK11_15720FPK12_15680FPK13_15770FPK14_15705FPK16_15695FPK17_15785FPK18_15735FPK19_15780FPK20_15775FPK21_15725FPK22_15730HRD52_15155HRD53_15145

EC: 2.7.4.22
UniProt
Find proteins for A0A045IH65 (Mycobacterium tuberculosis)
Explore A0A045IH65 
Go to UniProtKB:  A0A045IH65
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UTP (Subject of Investigation/LOI)
Query on UTP

Download Ideal Coordinates CCD File 
F [auth B], H [auth C]URIDINE 5'-TRIPHOSPHATE
C9 H15 N2 O15 P3
PGAVKCOVUIYSFO-XVFCMESISA-N
 Ligand Interaction
UDP (Subject of Investigation/LOI)
Query on UDP

Download Ideal Coordinates CCD File 
D [auth A], E [auth B], G [auth C]URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.85 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Marie Sklodowska-Curie Actions, FragNET ITNEuropean Union675555
Agence Nationale de la Recherche (ANR)FranceANR-10-INBS-05

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-12
    Type: Initial release