7BB6

AVP-V2R-Galphas-beta1-gamma2-Nb35 (L state)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-electron microscopy structure of the antidiuretic hormone arginine-vasopressin V2 receptor signaling complex.

Bous, J.Orcel, H.Floquet, N.Leyrat, C.Lai-Kee-Him, J.Gaibelet, G.Ancelin, A.Saint-Paul, J.Trapani, S.Louet, M.Sounier, R.Demene, H.Granier, S.Bron, P.Mouillac, B.

(2021) Sci Adv 7

  • DOI: https://doi.org/10.1126/sciadv.abg5628
  • Primary Citation of Related Structures:  
    7BB6, 7BB7

  • PubMed Abstract: 

    The antidiuretic hormone arginine-vasopressin (AVP) forms a signaling complex with the V2 receptor (V2R) and the G s protein, promoting kidney water reabsorption. Molecular mechanisms underlying activation of this critical G protein-coupled receptor (GPCR) signaling system are still unknown. To fill this gap of knowledge, we report here the cryo-electron microscopy structure of the AVP-V2R-G s complex. Single-particle analysis revealed the presence of three different states. The two best maps were combined with computational and nuclear magnetic resonance spectroscopy constraints to reconstruct two structures of the ternary complex. These structures differ in AVP and G s binding modes. They reveal an original receptor-G s interface in which the Gα s subunit penetrates deep into the active V2R. The structures help to explain how V2R R137H or R137L/C variants can lead to two severe genetic diseases. Our study provides important structural insights into the function of this clinically relevant GPCR signaling complex.


  • Organizational Affiliation

    Institut de Génomique Fonctionnelle, Université de Montpellier, CNRS, INSERM, 34094 Montpellier cedex 5, France.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Vasopressin V2 receptor440Homo sapiensMutation(s): 0 
Gene Names: AVPR2ADHRDIRDIR3V2R
Membrane Entity: Yes 
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Find proteins for P30518 (Homo sapiens)
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Go to UniProtKB:  P30518
PHAROS:  P30518
GTEx:  ENSG00000126895 
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UniProt GroupP30518
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1B [auth C]371Homo sapiensMutation(s): 0 
Gene Names: GNB1
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Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
GTEx:  ENSG00000078369 
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UniProt GroupP62873
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(s) subunit alpha isoforms shortC [auth E]394Homo sapiensMutation(s): 0 
Gene Names: GNASGNAS1GSP
Membrane Entity: Yes 
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Find proteins for P63092 (Homo sapiens)
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PHAROS:  P63092
GTEx:  ENSG00000087460 
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UniProt GroupP63092
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2D [auth F]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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PHAROS:  P59768
GTEx:  ENSG00000186469 
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UniProt GroupP59768
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
arginine-vasopressinE [auth H]10Homo sapiensMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for P01185 (Homo sapiens)
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PHAROS:  P01185
GTEx:  ENSG00000101200 
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UniProt GroupP01185
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Nanobody 35F [auth B]138Lama glamaMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Foundation for Medical Research (France)FranceDEQ20150331736
Agence Nationale de la Recherche (ANR)FranceANR-19-CE11-0014

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-02
    Type: Initial release
  • Version 1.1: 2021-06-30
    Changes: Structure summary