7B6Y | pdb_00007b6y

C8(355-600) from the MiniTRAPPIII complex

PDB DOI: https://doi.org/10.2210/pdb7B6Y/pdb
EM Map EMD-12058: EMDB EMDataResource

Classification: EXOCYTOSIS
Organism(s): Drosophila melanogaster
Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
Mutation(s): No

Deposited: 2020-12-08 Released: 2022-01-12
Deposition Author(s): Galindo, A., Munro, S., Planelles-Herrero, V.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 5.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into the metazoan TRAPP complexes that activate Rab1 and Rab11.

Galindo, A., Munro, S., Planelles-Herrero, V.J., Degliesposti, G.

To be published.

Macromolecule Content

Total Structure Weight: 28.38 kDa
Atom Count: 1,710
Modeled Residue Count: 208
Deposited Residue Count: 246
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FI18195p1	A	246	Drosophila melanogaster	Mutation(s): 0 Gene Names: l(3)76BDm, Dmel\CG8793, l(3)76BDm-RA, l(3)L3809, TRAPPC8, CG8793, Dmel_CG8793
UniProt
Find proteins for Q9VW22 (Drosophila melanogaster) Explore Q9VW22 Go to UniProtKB: Q9VW22
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9VW22
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 5.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	Coot	0.9
RECONSTRUCTION	RELION	3.1.1

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2022-01-12

Deposition Author(s):

Planelles-Herrero, V.J.

Revision History (Full details and data files)

Version 1.0: 2022-01-12
Type: Initial release
Version 1.1: 2024-07-10
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.