A novel and highly specific Forssman antigen-binding protein from sheep polyomavirus
Rustmeier, N.H., Silva, L.M., Di Maio, A., Mueller, J.C., Herrmann, A., Feizi, T., Liu, Y., Stehle, T.(2023) Biorxiv 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2023) Biorxiv 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Capsid protein VP1 | 276 | Sheep polyomavirus 1 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A0E3ZCF3 (Sheep polyomavirus 1) Explore A0A0E3ZCF3  Go to UniProtKB:  A0A0E3ZCF3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0E3ZCF3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose | K [auth AaA], M [auth CaC], O [auth FaF], P [auth HaH] | 3 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan:  G30239EK GlyCosmos:  G30239EK GlyGen:  G30239EK |
Ligands 6 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PGE Query on PGE | V [auth BBB], W [auth BBB], X [auth BBB] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
MPD Query on MPD | GB [auth III], NA [auth EEE], WA [auth GGG] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
PEG Query on PEG | BA [auth CCC] EA [auth CCC] IA [auth DDD] LA [auth EEE] R [auth AAA] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO Query on EDO | AB [auth HHH] BB [auth HHH] CA [auth CCC] CB [auth HHH] DA [auth CCC] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
K Query on K | AA [auth BBB] EB [auth HHH] HA [auth CCC] KA [auth DDD] LB [auth III] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
MG Query on MG | DB [auth HHH] GA [auth CCC] JA [auth DDD] JB [auth III] KB [auth III] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 130.274 | α = 90 |
b = 130.274 | β = 90 |
c = 222.145 | γ = 120 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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German Research Foundation (DFG) | Germany | FOR2327 |