7B4M | pdb_00007b4m

CryoEM structure of the human sodium proton exchanger NHA2 in nanodisc

PDB DOI: https://doi.org/10.2210/pdb7B4M/pdb
EM Map EMD-12003: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Expression System: Saccharomyces cerevisiae
Mutation(s): No
Membrane Protein: Yes OPMPDBTMMemProtMD

Deposited: 2020-12-02 Released: 2022-01-12
Deposition Author(s): Woehlert, D., Kuhlbrandt, W., Yildiz, O.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 7.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

CryoEM structure of the human sodium proton exchanger NHA2 in nanodisc

Woehlert, D., Kuhlbrandt, W., Yildiz, O.

To be published.

Macromolecule Content

Total Structure Weight: 115.22 kDa
Atom Count: 6,760
Modelled Residue Count: 918
Deposited Residue Count: 1,074
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sodium/hydrogen exchanger 9B2	A, B	537	Homo sapiens	Mutation(s): 0 Gene Names: SLC9B2, NHA2, NHEDC2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q86UD5 (Homo sapiens) Explore Q86UD5 Go to UniProtKB: Q86UD5
PHAROS: Q86UD5 GTEx: ENSG00000164038
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q86UD5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 7.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-01-12

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	SFB807

Revision History (Full details and data files)

Version 1.0: 2022-01-12
Type: Initial release
Version 1.1: 2024-07-10
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.