7ANG

MlghB, GDP-mannoheptose C3,5 epimerase from Campylobacter jejuni

PDB DOI: https://doi.org/10.2210/pdb7ANG/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Campylobacter jejuni
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-10-11 Released: 2020-10-21
Deposition Author(s): Naismith, J.H., Woodward, L.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.14 Å
R-Value Free: 0.239
R-Value Work: 0.215
R-Value Observed: 0.216

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

MghlB

Naismith, J.H., Woodward, L.

To be published.

Macromolecule Content

Total Structure Weight: 82.96 kDa
Atom Count: 5,715
Modelled Residue Count: 678
Deposited Residue Count: 708
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thymidine diphospho-4-keto-rhamnose 3,5-epimerase	A, B, C, D	177	Campylobacter jejuni	Mutation(s): 0 Gene Names: A0Z41_07375, A4277_09450, B4O43_09685, B7M65_03490, BGG25_09075, BM409_09635, BM444_09010, BM513_08715, BSK70_08235, BSO22_09160... A0Z41_07375, A4277_09450, B4O43_09685, B7M65_03490, BGG25_09075, BM409_09635, BM444_09010, BM513_08715, BSK70_08235, BSO22_09160, BZL95_08990, C1418_09190, CLC11_09605, CUT57_09155, D6H09_04530, DDO06_09345, DDV78_09325, DMN69_08700, DNA92_09015, DUY83_08160, DYU98_09455, E7P31_08690, E7R39_08745, EID41_09365, F0020_07730, F0E95_08655, F0F84_08705, F0F98_08535, F0G47_08120, F0G48_09050, F0N28_08120, F1N65_08765, F1O83_08575, F6069_09535, F7J52_08685, F7N67_09750, F9736_08800, FJ686_08855, FLI41_08630, FLR61_08490, FM724_09165, FNQ00_09015, FNW64_09490, FQX08_09165, FR479_08460, FVI37_08595, FVM38_08185, FVM79_08160, FVN10_08670, FVY82_08610, FVZ89_08655, FW037_08340, FW114_08530, FW212_08130, FW254_07800, FW615_08225, FW631_08740, FW892_08160, FW922_08210, FWA46_08455, FWB30_08765, FWZ78_00520, FXA21_08555, FXA45_08490, FY829_09115, FZJ28_08750, FZV74_08235, GAU91_08625, GAX51_09520, GCY42_03565, GI147_08930, GI310_08945, GLM94_08700, GPY87_09225, GQ373_08515, GS576_08280, GSX00_06480, GTI33_08365, GTQ72_08215, GV351_09030, GWW43_07680, GXS63_001730, GZD67_001691, VQ12_003125 EC: 5.1.3.13
UniProt
Find proteins for Q0P8I4 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)) Explore Q0P8I4 Go to UniProtKB: Q0P8I4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q0P8I4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.14 Å
R-Value Free: 0.239
R-Value Work: 0.215
R-Value Observed: 0.216
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.258	α = 90
b = 121.67	β = 90
c = 153.797	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-10-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	100209/Z/12/Z)

Revision History (Full details and data files)

Version 1.0: 2020-10-21
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.