7AMY

Nonameric cytoplasmic domain of FlhA from Vibrio parahaemolyticus


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Nonameric structures of the cytoplasmic domain of FlhA and SctV in the context of the full-length protein.

Kuhlen, L.Johnson, S.Cao, J.Deme, J.C.Lea, S.M.

(2021) PLoS One 16: e0252800-e0252800

  • DOI: https://doi.org/10.1371/journal.pone.0252800
  • Primary Citation of Related Structures:  
    7ALW, 7AMY

  • PubMed Abstract: 

    Type three secretion is the mechanism of protein secretion found in bacterial flagella and injectisomes. At its centre is the export apparatus (EA), a complex of five membrane proteins through which secretion substrates pass the inner membrane. While the complex formed by four of the EA proteins has been well characterised structurally, little is known about the structure of the membrane domain of the largest subunit, FlhA in flagella, SctV in injectisomes. Furthermore, the biologically relevant nonameric assembly of FlhA/SctV has been infrequently observed and differences in conformation of the cytoplasmic portion of FlhA/SctV between open and closed states have been suggested to reflect secretion system specific differences. FlhA has been shown to bind to chaperone-substrate complexes in an open state, but in previous assembled ring structures, SctV is in a closed state. Here, we identify FlhA and SctV homologues that can be recombinantly produced in the oligomeric state and study them using cryo-electron microscopy. The structures of the cytoplasmic domains from both FlhA and SctV are in the open state and we observe a conserved interaction between a short stretch of residues at the N-terminus of the cytoplasmic domain, known as FlhAL/SctVL, with a groove on the adjacent protomer's cytoplasmic domain, which stabilises the nonameric ring assembly.


  • Organizational Affiliation

    Sir William Dunn School of Pathology, Oxford, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthesis protein FlhA
A, B, C, D, E
A, B, C, D, E, F, G, H, I
702Vibrio parahaemolyticusMutation(s): 0 
Gene Names: flhAC1S91_05000C9I78_24000CGI34_13080D5E78_16030E4P16_05430F0L99_07770WR32_16185
UniProt
Find proteins for Q87FX4 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633))
Explore Q87FX4 
Go to UniProtKB:  Q87FX4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ87FX4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.75 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom109136
Wolfson FoundationUnited KingdomWL160052
Wellcome TrustUnited Kingdom100298
Wellcome TrustUnited Kingdom219477
Medical Research Council (MRC, United Kingdom)United KingdomS021264

Revision History  (Full details and data files)

  • Version 1.0: 2021-06-02
    Type: Initial release
  • Version 1.1: 2021-07-07
    Changes: Database references
  • Version 1.2: 2024-05-01
    Changes: Data collection, Database references