7AG9 | pdb_00007ag9

Structure of the Kar9 protein

PDB DOI: https://doi.org/10.2210/pdb7AG9/pdb

Classification: CELL CYCLE
Organism(s): Naumovozyma castellii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2020-09-22 Released: 2021-07-07
Deposition Author(s): Kumar, A., prota, A.E., Steinmetz, M.O.
Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free:
0.289 (Depositor), 0.290 (DCC)
R-Value Work:
0.264 (Depositor), 0.260 (DCC)
R-Value Observed:
0.266 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of the Kar9 protein

Kumar, A., Steinmetz, M.O.

(2021) Structure

Macromolecule Content

Total Structure Weight: 100.58 kDa
Atom Count: 5,948
Modeled Residue Count: 759
Deposited Residue Count: 856
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Kar9	A, B	428	Naumovozyma castellii	Mutation(s): 0 Gene Names: NCAS0D02220, NCAS_0D02220
UniProt
Find proteins for G0VE12 (Naumovozyma castellii) Explore G0VE12 Go to UniProtKB: G0VE12
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G0VE12
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free: 0.289 (Depositor), 0.290 (DCC)
R-Value Work: 0.264 (Depositor), 0.260 (DCC)
R-Value Observed: 0.266 (Depositor)

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 125.621	α = 90
b = 125.621	β = 90
c = 165.274	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2021-07-07

Deposition Author(s):

Steinmetz, M.O.

Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	31003A_166608

Revision History (Full details and data files)

Version 1.0: 2021-07-07
Type: Initial release
Version 1.1: 2024-05-15
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.