6YWX

The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site

  • Classification: TRANSLATION
  • Organism(s): Neurospora crassa OR74A
  • Mutation(s): No 

  • Deposited: 2020-04-30 Released: 2020-11-11 
  • Deposition Author(s): Amunts, A., Itoh, Y., Naschberger, A.
  • Funding Organization(s): Swedish Research Council, European Research Council (ERC), Knut and Alice Wallenberg Foundation, European Molecular Biology Organization (EMBO)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi.

Itoh, Y.Naschberger, A.Mortezaei, N.Herrmann, J.M.Amunts, A.

(2020) Nat Commun 11: 5187-5187

  • DOI: 10.1038/s41467-020-18830-w
  • Primary Citation of Related Structures:  
    6YW5, 6YWE, 6YWS, 6YWV, 6YWX, 6YWY

  • PubMed Abstract: 
  • Mitoribosomes are specialized protein synthesis machineries in mitochondria. However, how mRNA binds to its dedicated channel, and tRNA moves as the mitoribosomal subunit rotate with respect to each other is not understood. We report models of the translating fungal mitoribosome with mRNA, tRNA and nascent polypeptide, as well as an assembly intermediate ...

    Mitoribosomes are specialized protein synthesis machineries in mitochondria. However, how mRNA binds to its dedicated channel, and tRNA moves as the mitoribosomal subunit rotate with respect to each other is not understood. We report models of the translating fungal mitoribosome with mRNA, tRNA and nascent polypeptide, as well as an assembly intermediate. Nicotinamide adenine dinucleotide (NAD) is found in the central protuberance of the large subunit, and the ATPase inhibitory factor 1 (IF 1 ) in the small subunit. The models of the active mitoribosome explain how mRNA binds through a dedicated protein platform on the small subunit, tRNA is translocated with the help of the protein mL108, bridging it with L1 stalk on the large subunit, and nascent polypeptide paths through a newly shaped exit tunnel involving a series of structural rearrangements. An assembly intermediate is modeled with the maturation factor Atp25, providing insight into the biogenesis of the mitoribosomal large subunit and translation regulation.


    Organizational Affiliation

    Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 17165, Solna, Sweden. amunts@scilifelab.se.



Macromolecules

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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L2B383Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU02757
UniProt
Find proteins for Q7SCX7 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L3C384Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06749
UniProt
Find proteins for Q1K8T6 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L4, variantD325Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01474
UniProt
Find proteins for V5IMN1 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L5E352Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU04171
UniProt
Find proteins for Q1K6P0 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L6F255Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU04068
UniProt
Find proteins for Q7RZF0 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
RIBOSOMAL_L9 domain-containing proteinG300Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU09999
UniProt
Find proteins for Q7S054 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
uL10mH [auth f]347Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU04412
UniProt
Find proteins for Q7RZ62 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L19I [auth g]158Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU04336
UniProt
Find proteins for Q7RX40 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal protein L13J [auth H]183Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU07852
UniProt
Find proteins for Q7SBV6 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L14K [auth I]131Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08552
UniProt
Find proteins for Q7SBJ8 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal subunit protein L15L [auth J]312Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU05714
UniProt
Find proteins for Q7SB98 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L16M [auth K]249Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06768
UniProt
Find proteins for F5HIJ5 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L17N [auth L]193Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01023
UniProt
Find proteins for Q1K8C8 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial ribosomal proteinO [auth M]258Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06450
UniProt
Find proteins for Q7RYW8 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
Aconitate hydrataseP [auth N]217Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU00977
UniProt
Find proteins for Q7SGE5 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial large ribosomal subunitQ [auth O]364Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU05813
UniProt
Find proteins for Q7S5N0 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial ribosomal protein subunit L23R [auth P]228Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08329
UniProt
Find proteins for Q7SA60 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
KOW domain-containing proteinS [auth Q]396Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01485
UniProt
Find proteins for Q7RXU7 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
bL27mT [auth R]447Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08861
UniProt
Find proteins for Q1K730 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L24U [auth S]274Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08410
UniProt
Find proteins for Q7SC44 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
54S ribosomal protein L4, mitochondrialV [auth T]263Neurospora crassa OR74AMutation(s): 0 
Gene Names: mrpl-4NCU05287
UniProt
Find proteins for Q7S910 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L30W [auth U]161Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06786
UniProt
Find proteins for Q1K8Y7 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
bL31mX [auth V]219Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU04138
UniProt
Find proteins for Q1K7L7 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial ribosomal protein subunit L32Y [auth W]129Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU03516
UniProt
Find proteins for Q1K4P1 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
bL33mZ [auth X]59Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU17114
UniProt
Find proteins for V5IM60 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
Related to ribosomal protein L34, mitochondrialAA [auth Y]140Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU03638
UniProt
Find proteins for Q1K7P9 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal proteinBA [auth 0]124Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06038
UniProt
Find proteins for Q7S4E7 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial large ribosomal subunit YmL35CA [auth 1]449Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01473
UniProt
Find proteins for Q7RXV8 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
mL40DA [auth 2]370Neurospora crassa OR74AMutation(s): 0 
UniProt
Find proteins for A0A0B0DWX0 (Neurospora crassa)
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
mL41EA [auth 3]103Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU07057
UniProt
Find proteins for Q7S5W0 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial ribosomal protein L43FA [auth 4]138Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU07549
UniProt
Find proteins for Q7S300 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L3GA [auth 5]439Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08299
UniProt
Find proteins for Q7SA88 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal subunit L30HA [auth 6]368Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU07560
UniProt
Find proteins for Q7S1Z3 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
mL49IA [auth 7]165Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU05890
UniProt
Find proteins for Q7S518 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
mL50JA [auth 8]443Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU05552
UniProt
Find proteins for Q7S711 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 37
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Mitochondrial ribosomal protein L44KA [auth h]98Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU00952
UniProt
Find proteins for Q7SGH0 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
mL54LA [auth i]218Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU03094
UniProt
Find proteins for Q7SCZ3 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 39
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RNase III domain-containing proteinMA [auth 9]267Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU09826
UniProt
Find proteins for Q7S1R6 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
60S ribosomal protein L20NA [auth a]225Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU04225
UniProt
Find proteins for Q1K6U7 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial 60S ribosomal protein L25OA [auth b]162Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU02804
UniProt
Find proteins for Q7SEK9 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
54S ribosomal protein L31, mitochondrialPA [auth c]110Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU00211
UniProt
Find proteins for U9W8F2 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
mL67QA [auth d]292Neurospora crassa OR74AMutation(s): 0 
Gene Names: mL67NCU00103
UniProt
Find proteins for Q7RYM5 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
bS1mRA [auth AA]470Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU11345
UniProt
Find proteins for A7UWX2 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
Mito ribosomal protein S2SA [auth BB]428Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU12023
UniProt
Find proteins for V5ILE0 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosomal protein S5, mitochondrialTA [auth CC]508Neurospora crassa OR74AMutation(s): 0 
Gene Names: rms5NCM009NCU16005
UniProt
Find proteins for P23351 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 47
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Mito ribosomal protein S4UA [auth DD]453Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08296
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Entity ID: 48
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37S ribosomal protein S5VA [auth EE]477Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01800
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Entity ID: 49
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Mito ribosomal protein S6WA [auth FF]117Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU05717
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Entity ID: 50
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Ribosomal_S7 domain-containing proteinXA [auth GG]309Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU04806
UniProt
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Entity ID: 51
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40S ribosomal protein S8YA [auth HH]161Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU02951
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Entity ID: 52
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37S ribosomal protein S9, mitochondrialZA [auth II]315Neurospora crassa OR74AMutation(s): 0 
Gene Names: mrp-982C3.030NCU03827
UniProt
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Entity ID: 53
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37S ribosomal protein S10, mitochondrialAB [auth JJ]268Neurospora crassa OR74AMutation(s): 0 
Gene Names: mrp-10rsm10NCU00114
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Entity ID: 54
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Mitochondrial ribosomal protein subunit S18BB [auth KK]376Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU03230
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Entity ID: 55
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Mitochondrial 30S ribosomal protein S12CB [auth LL]174Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06542
UniProt
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Entity ID: 56
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40S ribosomal protein S13DB [auth MM]119Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU09539
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Entity ID: 57
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Mitochondrial 40S ribosomal protein MRP2EB [auth NN]113Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU00564
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Find proteins for Q7SF85 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 58
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Ribosomal protein S15FB [auth OO]320Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU03394
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Entity ID: 59
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Ribosomal protein S16, mitochondrialGB [auth PP]107Neurospora crassa OR74AMutation(s): 0 
Gene Names: cyt-21NCU08071
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Find proteins for P08580 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 60
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Mitochondrial 37S ribosomal protein S17HB [auth QQ]165Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU02419
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Entity ID: 61
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Mito ribosomal protein S18IB [auth RR]256Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01007
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Entity ID: 62
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Mitochondrial ribosomal protein S19JB [auth SS]91Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08728
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Entity ID: 63
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Mito ribosomal protein S21KB [auth TT]236Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06958
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Entity ID: 64
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37S ribosomal protein S25, mitochondrialLB [auth UU]253Neurospora crassa OR74AMutation(s): 0 
Gene Names: rsm-25NCU03343
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Entity ID: 65
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mS26MB [auth VV]316Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU02545
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Entity ID: 66
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mS27NB [auth WW]396Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06451
UniProt
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Entity ID: 67
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Mitochondrial ribosomal protein DAP3OB [auth XX]469Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08120
UniProt
Find proteins for Q7SD06 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 68
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mS33PB [auth YY]108Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01761
UniProt
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Entity ID: 69
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37S ribosomal protein S24, mitochondrialQB [auth ZZ]382Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU03926
UniProt
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Entity ID: 70
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37S ribosomal protein mrp10, mitochondrialRB [auth 11]90Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU06066
UniProt
Find proteins for Q7S4Y4 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 71
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DUF1713 domain-containing proteinSB [auth 22]344Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU02548
UniProt
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Entity ID: 72
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IGR domain-containing proteinTB [auth 33]236Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU03653
UniProt
Find proteins for Q1K6Q3 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 73
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Fe superoxide dismutaseUB [auth 44], VB [auth 55]310Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU07386
UniProt
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Entity ID: 74
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mS45WB [auth 66]348Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01894
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Entity ID: 75
MoleculeChainsSequence LengthOrganismDetailsImage
mS46XB [auth 77]414Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU07493
UniProt
Find proteins for Q7SG49 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 76
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3-hydroxyisobutyryl-CoA hydrolase, mitochondrialYB [auth 88]508Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU03777
EC: 3.1.2.4
UniProt
Find proteins for Q1K7A4 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 77
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IF1ZB [auth 00], AC [auth 99]95Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU02807
UniProt
Find proteins for V5IRA3 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 80
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60S ribosomal protein L1DC [auth e]303Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU08893
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Find proteins for Q1K699 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 81
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L51_S25_CI-B8 domain-containing proteinEC [auth j]201Neurospora crassa OR74AMutation(s): 0 
Gene Names: NCU01650
UniProt
Find proteins for Q7RWZ7 (Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987))
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Entity ID: 1
MoleculeChainsLengthOrganismImage
23S rRNAA3464Neurospora crassa OR74A
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Entity ID: 78
MoleculeChainsLengthOrganismImage
16S rRNABC [auth aa]1864Neurospora crassa OR74A
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Entity ID: 79
MoleculeChainsLengthOrganismImage
tRNA E-siteCC [auth bb]61Neurospora crassa OR74A
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Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD (Subject of Investigation/LOI)
Query on NAD

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CJ [auth E]NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
ATP (Subject of Investigation/LOI)
Query on ATP

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JJ [auth XX]ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
SPM (Subject of Investigation/LOI)
Query on SPM

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ZH [auth A]SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
 Ligand Interaction
ZN
Query on ZN

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EJ [auth W], FJ [auth 0]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
K
Query on K

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AI [auth A] , AJ [auth A] , BI [auth A] , BJ [auth A] , CI [auth A] , DI [auth A] , DJ [auth K] , EI [auth A] , 
AI [auth A], AJ [auth A], BI [auth A], BJ [auth A], CI [auth A], DI [auth A], DJ [auth K], EI [auth A], FI [auth A], GI [auth A], GJ [auth 2], GN [auth aa], HI [auth A], HJ [auth 3], HN [auth aa], II [auth A], IN [auth aa], JI [auth A], JN [auth aa], KI [auth A], KN [auth aa], LI [auth A], LJ [auth 77], LN [auth aa], MI [auth A], MJ [auth 88], MN [auth aa], NI [auth A], NN [auth aa], OI [auth A], ON [auth aa], PI [auth A], PN [auth aa], QI [auth A], QN [auth aa], RI [auth A], RN [auth aa], SI [auth A], SN [auth aa], TI [auth A], TN [auth aa], UI [auth A], UN [auth aa], VI [auth A], VN [auth aa], WI [auth A], WN [auth aa], XI [auth A], YI [auth A], ZI [auth A]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
AD [auth A] , AE [auth A] , AF [auth A] , AG [auth A] , AH [auth A] , AK [auth aa] , AL [auth aa] , AM [auth aa] , 
AD [auth A], AE [auth A], AF [auth A], AG [auth A], AH [auth A], AK [auth aa], AL [auth aa], AM [auth aa], AN [auth aa], BD [auth A], BE [auth A], BF [auth A], BG [auth A], BH [auth A], BK [auth aa], BL [auth aa], BM [auth aa], BN [auth aa], CD [auth A], CE [auth A], CF [auth A], CG [auth A], CH [auth A], CK [auth aa], CL [auth aa], CM [auth aa], CN [auth aa], DD [auth A], DE [auth A], DF [auth A], DG [auth A], DH [auth A], DK [auth aa], DL [auth aa], DM [auth aa], DN [auth aa], ED [auth A], EE [auth A], EF [auth A], EG [auth A], EH [auth A], EK [auth aa], EL [auth aa], EM [auth aa], EN [auth aa], FC [auth A], FD [auth A], FE [auth A], FF [auth A], FG [auth A], FH [auth A], FK [auth aa], FL [auth aa], FM [auth aa], FN [auth aa], GC [auth A], GD [auth A], GE [auth A], GF [auth A], GG [auth A], GH [auth A], GK [auth aa], GL [auth aa], GM [auth aa], HC [auth A], HD [auth A], HE [auth A], HF [auth A], HG [auth A], HH [auth A], HK [auth aa], HL [auth aa], HM [auth aa], IC [auth A], ID [auth A], IE [auth A], IF [auth A], IG [auth A], IH [auth A], IJ [auth BB], IK [auth aa], IL [auth aa], IM [auth aa], JC [auth A], JD [auth A], JE [auth A], JF [auth A], JG [auth A], JH [auth A], JK [auth aa], JL [auth aa], JM [auth aa], KC [auth A], KD [auth A], KE [auth A], KF [auth A], KG [auth A], KH [auth A], KJ [auth XX], KK [auth aa], KL [auth aa], KM [auth aa], LC [auth A], LD [auth A], LE [auth A], LF [auth A], LG [auth A], LH [auth A], LK [auth aa], LL [auth aa], LM [auth aa], MC [auth A], MD [auth A], ME [auth A], MF [auth A], MG [auth A], MH [auth A], MK [auth aa], ML [auth aa], MM [auth aa], NC [auth A], ND [auth A], NE [auth A], NF [auth A], NG [auth A], NH [auth A], NJ [auth 00], NK [auth aa], NL [auth aa], NM [auth aa], OC [auth A], OD [auth A], OE [auth A], OF [auth A], OG [auth A], OH [auth A], OJ [auth aa], OK [auth aa], OL [auth aa], OM [auth aa], PC [auth A], PD [auth A], PE [auth A], PF [auth A], PG [auth A], PH [auth A], PJ [auth aa], PK [auth aa], PL [auth aa], PM [auth aa], QC [auth A], QD [auth A], QE [auth A], QF [auth A], QG [auth A], QH [auth A], QJ [auth aa], QK [auth aa], QL [auth aa], QM [auth aa], RC [auth A], RD [auth A], RE [auth A], RF [auth A], RG [auth A], RH [auth A], RJ [auth aa], RK [auth aa], RL [auth aa], RM [auth aa], SC [auth A], SD [auth A], SE [auth A], SF [auth A], SG [auth A], SH [auth A], SJ [auth aa], SK [auth aa], SL [auth aa], SM [auth aa], TC [auth A], TD [auth A], TE [auth A], TF [auth A], TG [auth A], TH [auth A], TJ [auth aa], TK [auth aa], TL [auth aa], TM [auth aa], UC [auth A], UD [auth A], UE [auth A], UF [auth A], UG [auth A], UH [auth A], UJ [auth aa], UK [auth aa], UL [auth aa], UM [auth aa], VC [auth A], VD [auth A], VE [auth A], VF [auth A], VG [auth A], VH [auth A], VJ [auth aa], VK [auth aa], VL [auth aa], VM [auth aa], WC [auth A], WD [auth A], WE [auth A], WF [auth A], WG [auth A], WH [auth A], WJ [auth aa], WK [auth aa], WL [auth aa], WM [auth aa], XC [auth A], XD [auth A], XE [auth A], XF [auth A], XG [auth A], XH [auth A], XJ [auth aa], XK [auth aa], XL [auth aa], XM [auth aa], YC [auth A], YD [auth A], YE [auth A], YF [auth A], YG [auth A], YH [auth A], YJ [auth aa], YK [auth aa], YL [auth aa], YM [auth aa], ZC [auth A], ZD [auth A], ZE [auth A], ZF [auth A], ZG [auth A], ZJ [auth aa], ZK [auth aa], ZL [auth aa], ZM [auth aa]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSwedenNT_2015-04107
European Research Council (ERC)European Union(ERC-2018-StG-805230
Knut and Alice Wallenberg FoundationSweden2018.0080
European Molecular Biology Organization (EMBO)European UnionH2020-MSCA-IF-2017

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-11
    Type: Initial release