6YDH | pdb_00006ydh

Solution structure and dynamics of Zn-Finger HVO_2753 protein

PDB DOI: https://doi.org/10.2210/pdb6YDH/pdb
BMRB: 34500

Classification: METAL BINDING PROTEIN
Organism(s): Haloferax volcanii
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2020-03-20 Released: 2020-09-23
Deposition Author(s): Kubatova, N., Pyper, D., Schwalbe, H.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 6YDH

This is version 1.2 of the entry. See complete history.

Literature

Solution structure and dynamics of Zn-Finger HVO_2753 protein

Kubatova, N., Pyper, D., Schwalbe, H.

To be published.

Macromolecule Content

Total Structure Weight: 6.63 kDa
Atom Count: 452
Modeled Residue Count: 62
Deposited Residue Count: 62
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DUF1610 domain-containing protein	A	62	Haloferax volcanii	Mutation(s): 0 Gene Names: FQA18_04900
UniProt
Find proteins for D4GWB3 (Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)) Explore D4GWB3 Go to UniProtKB: D4GWB3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D4GWB3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2020-09-23

Deposition Author(s):

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	313752925

Revision History (Full details and data files)

Version 1.0: 2020-09-23
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-06-19
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.