Annotations: 6YDH

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Utp12	e6ydhA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Utp12	ECOD (v294.1)

Chains	Accession	Name	Description	Comments	Source
A	PF07754	Small zinc finger protein HVO_2753-like, Zn-binding pocket (HVO_2753_ZBP)	Small zinc finger protein HVO_2753-like, Zn-binding pocket	This domain is found in many archaeal proteins, including HVO_2753 (also known as Small CPxCG-related zinc finger protein) from Haloferax volcanii [1] and TK0111 from Thermococcus kodakarensis [2]. NMR 3D structure analysis revealed the content of fo ...	This domain is found in many archaeal proteins, including HVO_2753 (also known as Small CPxCG-related zinc finger protein) from Haloferax volcanii [1] and TK0111 from Thermococcus kodakarensis [2]. NMR 3D structure analysis revealed the content of four C(P)XCG motifs, suggesting the presence of two zinc-binding pockets (ZBPs). While some members of this entry bind two zinc ions [2], in HVO_2753, only C(P)XCG motifs 2 and 4 (comprising Cys-32 to Cys-35 and Cys-50 to Cys-53) form a ZBP and bind one zinc atom, while C(P)XCG motifs 1 and 3 (comprising Cys-12 to Cys-15 and Cys-39 to Cys-42) form a four-Cys cluster that do not bind zinc. The four C(P)XCG motifs are critical for protein stability, folding and functionality [1].	Domain

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DUF1610 domain-containing protein	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	archaeal-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms single-species biofilm formation single-species surface biofilm formation surface biofilm formation aggregation of unicellular organisms	-

Chains	Accession	Name	Type
A	IPR044720	Small ribosomal subunit protein aS21	Family
A	IPR049683	Zinc finger protein HVO_2753-like, euryarchaeota	Family
A	IPR011668	Ribosomal protein aS21, zinc-binding pocket	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6YDH | pdb_00006ydh