6Y7Q

Crystal Structure of the N-terminal PAS domain from the hERG3 Potassium Channel


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Discovery of a heme-binding domain in a neuronal voltage-gated potassium channel.

Burton, M.J.Cresser-Brown, J.Thomas, M.Portolano, N.Basran, J.Freeman, S.L.Kwon, H.Bottrill, A.R.Llansola-Portoles, M.J.Pascal, A.A.Jukes-Jones, R.Chernova, T.Schmid, R.Davies, N.W.Storey, N.M.Dorlet, P.Moody, P.C.E.Mitcheson, J.S.Raven, E.L.

(2020) J Biol Chem 295: 13277-13286

  • DOI: https://doi.org/10.1074/jbc.RA120.014150
  • Primary Citation of Related Structures:  
    6Y7Q

  • PubMed Abstract: 

    The EAG ( ether-à-go-go ) family of voltage-gated K + channels are important regulators of neuronal and cardiac action potential firing (excitability) and have major roles in human diseases such as epilepsy, schizophrenia, cancer, and sudden cardiac death. A defining feature of EAG (Kv10-12) channels is a highly conserved domain on the N terminus, known as the eag domain, consisting of a Per-ARNT-Sim (PAS) domain capped by a short sequence containing an amphipathic helix (Cap domain). The PAS and Cap domains are both vital for the normal function of EAG channels. Using heme-affinity pulldown assays and proteomics of lysates from primary cortical neurons, we identified that an EAG channel, hERG3 (Kv11.3), binds to heme. In whole-cell electrophysiology experiments, we identified that heme inhibits hERG3 channel activity. In addition, we expressed the Cap and PAS domain of hERG3 in Escherichia coli and, using spectroscopy and kinetics, identified the PAS domain as the location for heme binding. The results identify heme as a regulator of hERG3 channel activity. These observations are discussed in the context of the emerging role for heme as a regulator of ion channel activity in cells.


  • Organizational Affiliation

    Department of Chemistry, University of Leicester, Leicester, United Kingdom; Leicester Institute of Structural and Chemical Biology, University of Leicester, Leicester, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Potassium voltage-gated channel subfamily H member 7A [auth AAA]135Homo sapiensMutation(s): 0 
Gene Names: KCNH7ERG3
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NS40 (Homo sapiens)
Explore Q9NS40 
Go to UniProtKB:  Q9NS40
PHAROS:  Q9NS40
GTEx:  ENSG00000184611 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NS40
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.184 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 32.784α = 90
b = 32.784β = 90
c = 200.681γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
xia2data reduction
DIALSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/K000128/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M018598/1

Revision History  (Full details and data files)

  • Version 1.0: 2020-08-12
    Type: Initial release
  • Version 1.1: 2020-09-30
    Changes: Database references
  • Version 1.2: 2024-01-24
    Changes: Data collection, Database references, Derived calculations, Refinement description