Molecular basis for a bacterial adhesins peptide-binding module
Davies, P.L., Guo, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Antifreeze protein | 506 | Marinomonas primoryensis | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for A1YIY3 (Marinomonas primoryensis) Explore A1YIY3  Go to UniProtKB:  A1YIY3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YIY3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
peptide | 5 | synthetic construct | Mutation(s): 0  | ![]() | |
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
1PE Query on 1PE | AA [auth A], X [auth A], Y [auth A], Z [auth A] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N | |||
CA Query on CA | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
NA Query on NA | U [auth A], V [auth A], W [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 51.163 | α = 62.513 |
b = 58.922 | β = 85.814 |
c = 63.249 | γ = 65.932 |
Software Name | Purpose |
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PHENIX | refinement |
DIALS | data reduction |
xia2 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | -- |