Molecular basis for a bacterial adhesins peptide-binding module
Davies, P.L., Guo, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Antifreeze protein | 506 | Marinomonas primoryensis | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for A1YIY3 (Marinomonas primoryensis) Explore A1YIY3  Go to UniProtKB:  A1YIY3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A1YIY3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide | 4 | synthetic construct | Mutation(s): 0  | ![]() | |
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
1PE Query on 1PE | C [auth A], D [auth A], E [auth A] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N | |||
CA Query on CA | F [auth A] G [auth A] H [auth A] I [auth A] J [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 49.816 | α = 118.958 |
b = 61.598 | β = 106 |
c = 63.434 | γ = 93.318 |
Software Name | Purpose |
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PHENIX | refinement |
xia2 | data reduction |
DIALS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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Canadian Institutes of Health Research (CIHR) | -- |