6VYU

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of transcription-translation coupling.

Wang, C.Molodtsov, V.Firlar, E.Kaelber, J.T.Blaha, G.Su, M.Ebright, R.H.

(2020) Science 369: 1359-1365

  • DOI: 10.1126/science.abb5317
  • Primary Citation of Related Structures:  
    6VYZ, 6VYY, 6VU3, 6VYR, 6VZ3, 6VYQ, 6VZ2, 6VYT, 6VZ5, 6VYS

  • PubMed Abstract: 
  • In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the transc ...

    In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the transcription factors NusG (which is thought to bridge RNAP and the ribosome) and NusA. Here, we report cryo-electron microscopy structures of Escherichia coli transcription-translation complexes (TTCs) containing different-length mRNA spacers between RNAP and the ribosome active-center P site. Structures of TTCs containing short spacers show a state incompatible with NusG bridging and NusA binding (TTC-A, previously termed "expressome"). Structures of TTCs containing longer spacers reveal a new state compatible with NusG bridging and NusA binding (TTC-B) and reveal how NusG bridges and NusA binds. We propose that TTC-B mediates NusG- and NusA-dependent transcription-translation coupling.


    Organizational Affiliation

    Waksman Institute and Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ 08854, USA. minsu@umich.edu ebright@waksman.rutgers.edu.



Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L21 0103Escherichia coliMutation(s): 0 
Gene Names: rplU
Find proteins for D7ZEN7 (Escherichia coli MS 69-1)
Explore D7ZEN7 
Go to UniProtKB:  D7ZEN7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L22 1110Escherichia coliMutation(s): 0 
Gene Names: rplV
Find proteins for D7Z9G0 (Escherichia coli MS 69-1)
Explore D7Z9G0 
Go to UniProtKB:  D7Z9G0
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L23 2100Escherichia coliMutation(s): 0 
Gene Names: rplW
Find proteins for D7X2Z9 (Escherichia coli MS 198-1)
Explore D7X2Z9 
Go to UniProtKB:  D7X2Z9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L24 3104Escherichia coliMutation(s): 0 
Gene Names: rplX
Find proteins for D7Z9G6 (Escherichia coli MS 69-1)
Explore D7Z9G6 
Go to UniProtKB:  D7Z9G6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L25 494Escherichia coliMutation(s): 0 
Gene Names: rplY
Find proteins for D7XH79 (Escherichia coli MS 84-1)
Explore D7XH79 
Go to UniProtKB:  D7XH79
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit beta AA1342Escherichia coliMutation(s): 0 
Gene Names: rpoB
EC: 2.7.7.6
Find proteins for P0A8V4 (Escherichia coli O157:H7)
Explore P0A8V4 
Go to UniProtKB:  P0A8V4
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusG AB181Escherichia coliMutation(s): 0 
Gene Names: nusG
Find proteins for U9XYQ6 (Escherichia coli 113303)
Explore U9XYQ6 
Go to UniProtKB:  U9XYQ6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit alpha ACAD329Escherichia coliMutation(s): 0 
Gene Names: rpoA
EC: 2.7.7.6
Find proteins for A0A073G207 (Escherichia coli 2-427-07_S4_C3)
Explore A0A073G207 
Go to UniProtKB:  A0A073G207
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit beta' AE1407Escherichia coliMutation(s): 0 
Gene Names: rpoCBvCmsKKP036_03580G5696_22040
EC: 2.7.7.6
Find proteins for A0A4S1NBU2 (Escherichia coli)
Explore A0A4S1NBU2 
Go to UniProtKB:  A0A4S1NBU2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit omega AF91Escherichia coliMutation(s): 0 
Gene Names: rpoZ
EC: 2.7.7.6
Find proteins for A0A070UPX4 (Escherichia coli 2-177-06_S3_C2)
Explore A0A070UPX4 
Go to UniProtKB:  A0A070UPX4
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S18 C75Escherichia coliMutation(s): 0 
Gene Names: rpsR
Find proteins for E0J6I2 (Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W))
Explore E0J6I2 
Go to UniProtKB:  E0J6I2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S20 E87Escherichia coliMutation(s): 0 
Gene Names: rpsT
Find proteins for D7X3A7 (Escherichia coli MS 198-1)
Explore D7X3A7 
Go to UniProtKB:  D7X3A7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S21 F71Escherichia coliMutation(s): 0 
Gene Names: rpsU
Find proteins for E9TH65 (Escherichia coli MS 117-3)
Explore E9TH65 
Go to UniProtKB:  E9TH65
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S2 G241Escherichia coliMutation(s): 0 
Gene Names: rpsB
Find proteins for D7ZK99 (Escherichia coli MS 69-1)
Explore D7ZK99 
Go to UniProtKB:  D7ZK99
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S1 H557Escherichia coliMutation(s): 0 
Find proteins for D6HUW2 (Escherichia coli B088)
Explore D6HUW2 
Go to UniProtKB:  D6HUW2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S3 I233Escherichia coliMutation(s): 0 
Gene Names: rpsC
Find proteins for B7MCS9 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Explore B7MCS9 
Go to UniProtKB:  B7MCS9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S4 J206Escherichia coliMutation(s): 0 
Gene Names: rpsD
Find proteins for D7Z9H7 (Escherichia coli MS 69-1)
Explore D7Z9H7 
Go to UniProtKB:  D7Z9H7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S5 K167Escherichia coliMutation(s): 0 
Gene Names: rpsE
Find proteins for A0A1X3KX23 (Escherichia coli H420)
Explore A0A1X3KX23 
Go to UniProtKB:  A0A1X3KX23
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S6 L135Escherichia coliMutation(s): 0 
Gene Names: rpsF
Find proteins for P02358 (Escherichia coli (strain K12))
Explore P02358 
Go to UniProtKB:  P02358
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S7 M179Escherichia coliMutation(s): 0 
Gene Names: rpsGGHR40_06850NCTC12650_00665
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S8 N130Escherichia coliMutation(s): 0 
Gene Names: rpsH
Find proteins for D7Z9G9 (Escherichia coli MS 69-1)
Explore D7Z9G9 
Go to UniProtKB:  D7Z9G9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S9 O130Escherichia coliMutation(s): 0 
Gene Names: rpsI
Find proteins for D7ZES9 (Escherichia coli MS 69-1)
Explore D7ZES9 
Go to UniProtKB:  D7ZES9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S10 P103Escherichia coliMutation(s): 0 
Gene Names: rpsJ
Find proteins for I2X6I5 (Escherichia coli 2.3916)
Explore I2X6I5 
Go to UniProtKB:  I2X6I5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S11 Q129Escherichia coliMutation(s): 0 
Gene Names: rpsK
Find proteins for B7MCR3 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Explore B7MCR3 
Go to UniProtKB:  B7MCR3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S12 R124Escherichia coliMutation(s): 0 
Gene Names: rpsL
Find proteins for I2UHF1 (Escherichia coli 4.0522)
Explore I2UHF1 
Go to UniProtKB:  I2UHF1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S14 S101Escherichia coliMutation(s): 0 
Gene Names: rpsN
Find proteins for S0U3F8 (Escherichia sp. KTE114)
Explore S0U3F8 
Go to UniProtKB:  S0U3F8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S15 T89Escherichia coliMutation(s): 0 
Gene Names: rpsO
Find proteins for D7ZEL4 (Escherichia coli MS 69-1)
Explore D7ZEL4 
Go to UniProtKB:  D7ZEL4
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S16 U82Escherichia coliMutation(s): 0 
Gene Names: rpsP
Find proteins for B7MIU7 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Explore B7MIU7 
Go to UniProtKB:  B7MIU7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S17 V84Escherichia coliMutation(s): 0 
Gene Names: rpsQ
Find proteins for D7Z9G4 (Escherichia coli MS 69-1)
Explore D7Z9G4 
Go to UniProtKB:  D7Z9G4
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S19 W92Escherichia coliMutation(s): 0 
Gene Names: rpsS
Find proteins for S1EA57 (Escherichia coli KTE73)
Explore S1EA57 
Go to UniProtKB:  S1EA57
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S13 X118Escherichia coliMutation(s): 0 
Gene Names: rpsM
Find proteins for A0A0H3ML81 (Escherichia coli O7:K1 (strain IAI39 / ExPEC))
Explore A0A0H3ML81 
Go to UniProtKB:  A0A0H3ML81
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L27 b85Escherichia coliMutation(s): 0 
Gene Names: rpmA
Find proteins for I2X5R7 (Escherichia coli 2.3916)
Explore I2X5R7 
Go to UniProtKB:  I2X5R7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L28 c78Escherichia coliMutation(s): 0 
Gene Names: rpmB
Find proteins for A0A556Y8P1 (Escherichia coli O177)
Explore A0A556Y8P1 
Go to UniProtKB:  A0A556Y8P1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L29 e63Escherichia coliMutation(s): 0 
Gene Names: rpmC
Find proteins for A0A4Z0I8U1 (Escherichia sp. E5028)
Explore A0A4Z0I8U1 
Go to UniProtKB:  A0A4Z0I8U1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L30 f59Escherichia coliMutation(s): 0 
Find proteins for A0A659KGZ9 (Escherichia sp. E2748)
Explore A0A659KGZ9 
Go to UniProtKB:  A0A659KGZ9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L31 g70Escherichia coliMutation(s): 0 
Gene Names: rpmE
Find proteins for V0YYV3 (Escherichia coli 908573)
Explore V0YYV3 
Go to UniProtKB:  V0YYV3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L2 h273Escherichia coliMutation(s): 0 
Gene Names: rplB
Find proteins for P60422 (Escherichia coli (strain K12))
Explore P60422 
Go to UniProtKB:  P60422
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L32 i57Escherichia coliMutation(s): 0 
Gene Names: rpmF
Find proteins for S1DPI3 (Escherichia coli KTE64)
Explore S1DPI3 
Go to UniProtKB:  S1DPI3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L3 j209Escherichia coliMutation(s): 0 
Gene Names: rplC
Find proteins for P60438 (Escherichia coli (strain K12))
Explore P60438 
Go to UniProtKB:  P60438
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L33 k55Escherichia coliMutation(s): 0 
Gene Names: rpmG
Find proteins for V6FW62 (Escherichia coli 99.0741)
Explore V6FW62 
Go to UniProtKB:  V6FW62
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L4 l201Escherichia coliMutation(s): 0 
Gene Names: rplD
Find proteins for D7Z9F6 (Escherichia coli MS 69-1)
Explore D7Z9F6 
Go to UniProtKB:  D7Z9F6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L34 m46Escherichia coliMutation(s): 0 
Gene Names: rpmH
Find proteins for B7MGC4 (Escherichia coli O45:K1 (strain S88 / ExPEC))
Explore B7MGC4 
Go to UniProtKB:  B7MGC4
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L5 n179Escherichia coliMutation(s): 0 
Gene Names: rplE
Find proteins for T6LFZ6 (Escherichia coli HVH 87)
Explore T6LFZ6 
Go to UniProtKB:  T6LFZ6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L35 o65Escherichia coliMutation(s): 0 
Gene Names: rpmI
Find proteins for E1IKL4 (Escherichia coli MS 145-7)
Explore E1IKL4 
Go to UniProtKB:  E1IKL4
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L6 p177Escherichia coliMutation(s): 0 
Gene Names: rplF
Find proteins for E9YV47 (Escherichia coli M863)
Explore E9YV47 
Go to UniProtKB:  E9YV47
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L36 q38Escherichia coliMutation(s): 0 
Gene Names: rpmJ
Find proteins for A0A0E2L017 (Escherichia coli (strain UMEA 3162-1))
Explore A0A0E2L017 
Go to UniProtKB:  A0A0E2L017
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L9 r149Escherichia coliMutation(s): 0 
Gene Names: rplI
Find proteins for D7ZI15 (Escherichia coli MS 69-1)
Explore D7ZI15 
Go to UniProtKB:  D7ZI15
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L13 s142Escherichia coliMutation(s): 0 
Gene Names: rplM
Find proteins for D7ZET0 (Escherichia coli MS 69-1)
Explore D7ZET0 
Go to UniProtKB:  D7ZET0
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L14 t123Escherichia coliMutation(s): 0 
Gene Names: rplN
Find proteins for D7Z9G5 (Escherichia coli MS 69-1)
Explore D7Z9G5 
Go to UniProtKB:  D7Z9G5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L15 u144Escherichia coliMutation(s): 0 
Gene Names: 
rplOA8C65_19395A9R57_24660ACU57_21045AM464_09135AUQ13_22145BANRA_01932BANRA_03684BHS87_18545BJJ90_02210BMA87_18510BON75_18850BON98_13310BUE81_25610BvCms2454_01416BvCmsHHP001_00334BvCmsHHP019_04131BvCmsHHP056_02703BvCmsKSP026_02554BvCmsSINP011_02480BW690_10710BZL31_22885C5F72_02595C5F73_02860C5N07_23575C9E25_20065C9Z39_20710CA593_09735CG692_20270CI693_13520CI694_01990CIG45_22410D0X26_24495D2185_22985D3821_17755D3O91_20305D3Y67_24390D4638_19455D4718_17880D9C99_17930D9D20_21995D9D44_22490D9G29_15635D9G69_20945D9H68_17710D9J52_19090D9Z28_15390DAH37_14685DBQ99_03415DJ503_19770DL326_22310DNC98_19095DT034_22410DTL43_21000E2119_19640E2134_21880E2135_06185E4A44_21305E4K51_21490E4K55_21420E4K60_18985E4K61_20025E5P22_10480E5P28_20875EA213_19860EAI42_04990EAI52_16365EC1094V2_354EC3234A_55c00230EC3426_04459ECTO6_00449ED307_17010EEP23_17135EG808_17075EI021_21030EI028_20740EI032_18995EI041_20035EIZ93_12470EL75_0396EL79_0415EL80_0407ELT20_19170EPT01_19765ERS085365_03907ERS085416_03881ERS139211_03685ERS150873_04051EXX71_21335EYD11_02080F1E19_19655F9040_18095FRV13_20015FV293_22465FWK02_06270G5632_17770G5688_20025GHR40_07050GKF39_20550GKF74_18130GKF86_20070GKF89_18470GP671_20580GP689_20785GP954_00945GP979_02005GQE33_22230GQE34_14255GQE64_20420GQM17_19915GRW05_09060GRW27_21285GRW42_19350GRW57_03540GRW80_20585GRW81_21150NCTC10963_00456NCTC11022_03475NCTC11126_02772NCTC12650_00710NCTC13216_01351NCTC9045_00567NCTC9062_02686NCTC9117_00757NCTC9706_02738PGD_00585RK56_021420SAMEA3472047_03862SAMEA3472080_04748SAMEA3484427_04887SAMEA3484429_04875SAMEA3752559_00346SAMEA3753300_02227

Find proteins for A0A037Y8L6 (Escherichia coli)
Explore A0A037Y8L6 
Go to UniProtKB:  A0A037Y8L6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L16 v136Escherichia coliMutation(s): 0 
Gene Names: rplP
Find proteins for P0ADY7 (Escherichia coli (strain K12))
Explore P0ADY7 
Go to UniProtKB:  P0ADY7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L17 w127Escherichia coliMutation(s): 0 
Gene Names: rplQ
Find proteins for D6I1Y5 (Escherichia coli B088)
Explore D6I1Y5 
Go to UniProtKB:  D6I1Y5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L18 x117Escherichia coliMutation(s): 0 
Gene Names: rplR
Find proteins for H4JDL8 (Escherichia coli DEC1D)
Explore H4JDL8 
Go to UniProtKB:  H4JDL8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L19 y115Escherichia coliMutation(s): 0 
Gene Names: rplS
Find proteins for I2XAW2 (Escherichia coli 2.3916)
Explore I2XAW2 
Go to UniProtKB:  I2XAW2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L20 z118Escherichia coliMutation(s): 0 
Gene Names: rplT
Find proteins for L3P526 (Escherichia coli KTE66)
Explore L3P526 
Go to UniProtKB:  L3P526
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 6
MoleculeChainsLengthOrganismImage
NT DNA536synthetic construct
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 7
MoleculeChainsLengthOrganismImage
T DNA636synthetic construct
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 8
    MoleculeChainsLengthOrganismImage
    mRNA with a 27 nt long spacer716synthetic construct
    Find similar nucleic acids by: 
    (by identity cutoff)  |  Structure
    Entity ID: 9
    MoleculeChainsLengthOrganismImage
    E-site fMet-tRNAA, B76Escherichia coli
    Find similar nucleic acids by: 
    (by identity cutoff)  |  Structure
    Entity ID: 16
    MoleculeChainsLengthOrganismImage
    16S rRNAD1542Escherichia coli
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 37
      MoleculeChainsLengthOrganismImage
      mRNA in the ribosomal RNA entrance poreY3synthetic construct
      Find similar nucleic acids by: 
      (by identity cutoff)  |  Structure
      Entity ID: 38
      MoleculeChainsLengthOrganismImage
      23S rRNAa2904Escherichia coli
      Find similar nucleic acids by: 
      (by identity cutoff)  |  Structure
      Entity ID: 41
      MoleculeChainsLengthOrganismImage
      5S rRNAd120Escherichia coli
      Small Molecules
      Ligands 2 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      ZN
      Query on ZN

      Download Ideal Coordinates CCD File 
      AA
      ZINC ION
      Zn
      PTFCDOFLOPIGGS-UHFFFAOYSA-N
       Ligand Interaction
      MG
      Query on MG

      Download Ideal Coordinates CCD File 
      7
      MAGNESIUM ION
      Mg
      JLVVSXFLKOJNIY-UHFFFAOYSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: ELECTRON MICROSCOPY
      • Resolution: 7.00 Å
      • Aggregation State: PARTICLE 
      • Reconstruction Method: SINGLE PARTICLE 

      Structure Validation

      View Full Validation Report



      Entry History & Funding Information

      Deposition Data


      Funding OrganizationLocationGrant Number
      National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

      Revision History 

      • Version 1.0: 2020-09-02
        Type: Initial release
      • Version 1.1: 2020-09-23
        Changes: Database references