6VU3

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Structural basis of transcription-translation coupling.

Wang, C., Molodtsov, V., Firlar, E., Kaelber, J.T., Blaha, G., Su, M., Ebright, R.H.

(2020) Science 369: 1359-1365

  • DOI: 10.1126/science.abb5317
  • Primary Citation of Related Structures:  
    6VU3, 6VYR, 6VZ3, 6VYQ, 6VZ2, 6VYT, 6VZ5, 6VYS, 6VZ7, 6VYU

  • PubMed Abstract: 

    • In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the tr ...

    In bacteria, transcription and translation are coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA) is coordinated with the movement of the first ribosome-translating mRNA. Coupling is modulated by the transcription factors NusG (which is thought to bridge RNAP and the ribosome) and NusA. Here, we report cryo-electron microscopy structures of Escherichia coli transcription-translation complexes (TTCs) containing different-length mRNA spacers between RNAP and the ribosome active-center P site. Structures of TTCs containing short spacers show a state incompatible with NusG bridging and NusA binding (TTC-A, previously termed "expressome"). Structures of TTCs containing longer spacers reveal a new state compatible with NusG bridging and NusA binding (TTC-B) and reveal how NusG bridges and NusA binds. We propose that TTC-B mediates NusG- and NusA-dependent transcription-translation coupling.

    Organizational Affiliation: 

    Waksman Institute and Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ 08854, USA. minsu@umich.edu ebright@waksman.rutgers.edu.



Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L210103Escherichia coliMutation(s): 0 
Gene Names: rplU
Find proteins for D7ZEN7 (Escherichia coli MS 69-1)
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L221110Escherichia coliMutation(s): 0 
Gene Names: rplV
Find proteins for D7Z9G0 (Escherichia coli MS 69-1)
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L23294Escherichia coliMutation(s): 0 
Gene Names: rplW
Find proteins for D6I208 (Escherichia coli B088)
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L243103Escherichia coliMutation(s): 0 
Gene Names: rplX
Find proteins for D7XKZ6 (Escherichia coli MS 84-1)
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L25494Escherichia coliMutation(s): 0 
Gene Names: rplY
Find proteins for D7XH79 (Escherichia coli MS 84-1)
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L109148Escherichia coliMutation(s): 0 
Gene Names: rplJ, D7W70_25025, DLU82_24500
Find proteins for A0A3W3FJZ4 (Escherichia coli)
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit betaAA1342Escherichia coliMutation(s): 0 
Gene Names: rpoB
EC: 2.7.7.6
Find proteins for A0A140SS80 (Escherichia coli (strain B / BL21-DE3))
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription termination/antitermination protein NusGAB181Escherichia coliMutation(s): 0 
Gene Names: nusG
Find proteins for U9XYQ6 (Escherichia coli 113303)
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit alphaAC, AD230Escherichia coliMutation(s): 0 
Gene Names: rpoA, ELT49_23095
EC: 2.7.7.6
Find proteins for A0A5F0PYH4 (Escherichia coli)
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit beta'AE1407Escherichia coliMutation(s): 1 
Gene Names: rpoC, BvCmsKKP036_03580, G5696_22040
EC: 2.7.7.6
Find proteins for A0A4S1NBU2 (Escherichia coli)
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S18C66Escherichia coliMutation(s): 0 
Gene Names: rpsR
Find proteins for A0A222QU44 (Escherichia coli NCCP15648)
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S20E86Escherichia coliMutation(s): 0 
Gene Names: rpsT
Find proteins for D7X3A7 (Escherichia coli MS 198-1)
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S21F70Escherichia coliMutation(s): 0 
Gene Names: rpsU
Find proteins for E9TH65 (Escherichia coli MS 117-3)
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S2G225Escherichia coliMutation(s): 0 
Gene Names: 
rpsB, A6581_19565, A6592_02990, A8C65_17850, A9819_00790, A9P13_21180, A9R57_04400, AAW05_12805, AC067_04635, AJ318_03080, AM446_22760, AM464_17645, AM465_25885, AML35_22875, APT94_19995, APU18_02555, ARC77_20180, AU473_25970, AUQ13_07500, AW059_09840, AWE53_010740, AWF59_003780, AWG78_007095, AWG90_002345, AWP75_13480, AZZ83_003980, B6V57_00930, B7C53_01360, B9M99_16250, B9N33_22515, B9T59_07520, BANRA_00547, BANRA_02273, BANRA_03339, BE963_14830, BEN53_03085, BER14_07785, BFD68_21815, BHF03_16550, BHF46_07885, BHS87_00800, BIQ87_00790, BIU72_13410, BIZ41_19080, BJJ90_21360, BK248_07255, BK334_15020, BK373_09595, BK375_04645, BK383_20240, BMA87_12300, BMT49_02175, BMT91_01365, BON65_09430, BON66_02955, BON75_17145, BON83_24855, BON86_04410, BON87_26695, BON91_06960, BON92_02750, BON96_17215, BON98_18185, BTQ04_14405, BUE81_01710, BvCms12BK_00034, BvCms2454_04107, BvCms35BK_02145, BvCmsC61A_04364, BvCmsHHP001_04838, BvCmsHHP019_00044, BvCmsHHP056_04094, BvCmsKKP036_03788, BvCmsKSNP120_00104, BvCmsKSP026_04711, BvCmsKSP058_03767, BvCmsKSP076_03014, BvCmsNSP007_03764, BvCmsSINP022_00326, BW690_02470, BWI89_14055, BWP17_11915, BXT93_00705, BZL31_14940, BZL69_20205, C2M16_10795, C2U48_09610, C4K41_20910, C4M78_19960, C5715_17350, C5F72_21625, C5F73_07955, C5N07_08575, C5P44_18010, C6669_04250, C6B13_04325, C7B06_05860, C7B07_04280, C7B08_09695, C7B18_05305, C9E25_15390, C9E67_25210, C9Z23_08405, C9Z29_10375, C9Z39_04990, C9Z43_09525, C9Z68_04785, C9Z70_08115, C9Z78_00165, C9Z78_02775, CA593_02870, CCZ14_20505, CCZ17_20470, CDC27_24690, CDL37_07245, CG692_09500, CI693_15090, CI694_28160, CIG45_06990, CQP61_22090, CR539_04935, CRE06_00170, CRJUMX01_610033, CRT43_00990, CRX46_05020, CSB64_09595, CT146_12115, CUB99_08015, CVH05_24475, CWM24_05035, D0X26_09420, D1912_13690, D2185_20130, D2188_12785, D3821_06210, D3822_17335, D3M98_08935, D3O91_03185, D3P01_06970, D3P02_17575, D3Y67_16405, D4011_00170, D4023_14650, D4074_16625, D4638_01785, D4660_00170, D4718_00170, D4L91_00170, D4M06_01450, D4U49_05950, D4U85_02335, D4V08_16070, D5I97_00170, D6C36_00175, D6D43_00170, D6T60_04050, D6X63_10625, D6X76_09800, D7K33_03410, D7K63_00165, D7K66_11610, D7Y10_00165, D8Y65_01905, D9C99_12680, D9D20_18630, D9D31_08885, D9D33_03385, D9D43_02305, D9D44_06780, D9D94_08705, D9E13_16330, D9E34_01105, D9E35_14530, D9E49_02145, D9E73_02485, D9F17_00165, D9F32_01785, D9G11_19100, D9G29_09875, D9G42_07585, D9G48_08785, D9G69_05830, D9H10_00165, D9H36_21790, D9H53_14245, D9H68_13775, D9H70_04355, D9I20_08115, D9I37_13510, D9I87_01640, D9I88_06435, D9I97_03805, D9J03_00165, D9J11_16825, D9J52_04560, D9J58_13455, D9J60_02075, D9J78_12380, D9K02_06620, D9K54_16750, D9L89_00165, D9L99_05940, D9X77_14905, D9X97_00165, D9Z28_03940, DAH26_11215, DAH34_04190, DAH37_16335, DAH43_04025, DBQ99_21360, DD762_01090, DEN86_04070, DJ487_06020, DJ492_12760, DJ503_00895, DK132_00130, DL251_18750, DL257_01645, DL292_03085, DL326_07525, DL455_01615, DL979_07560, DLT82_10665, DLW88_03755, DLX38_05600, DLX40_11060, DLY44_08780, DM102_18365, DM129_14540, DM272_00165, DM280_04680, DM962_03245, DM973_00130, DMC44_08865, DMI04_00170, DMI53_01515, DMO02_00170, DMZ50_04115, DN627_10245, DN703_10125, DNB37_01435, DNC98_14250, DND16_04815, DNJ62_00170, DNK12_00170, DNR35_01445, DNR41_13200, DNX30_02270, DOE35_00170, DOM23_00165, DOS18_01655, DOT81_00170, DOU81_00170, DOY22_00170, DOY56_00170, DP258_09355, DQE91_03230, DQG35_00170, DRP48_00170, DS721_00170, DS966_12905, DT034_05340, DTL43_05925, DTL90_09735, DTM10_02780, DTM45_12630, DTZ20_16560, DU309_06140, DU321_03650, DU333_05950, DW236_10615, DWB25_20305, DXT73_18920, DXX80_017135, E0L04_16465, E0L12_05055, E2112_01240, E2114_18160, E2115_17375, E2119_15580, E2127_15010, E2128_01350, E2129_02860, E2134_11975, E2135_11635, E2148_14070, E4A44_06400, E4K51_05790, E4K55_06965, E4K60_12610, E4K61_17665, E5P22_04090, E5P28_13975, E5P37_21190, E5S56_11570, E5S58_05605, E5S61_20145, E5S62_13855, EA159_18560, EA164_17320, EA167_19605, EA174_03755, EA184_05180, EA189_12745, EA191_19905, EA198_08655, EA200_20625, EA203_17930, EA213_17805, EA214_17045, EA218_05095, EA222_15560, EA225_05600, EA231_02020, EA232_17985, EA233_03700, EA235_19385, EA239_13420, EA242_20415, EA245_19675, EA247_16770, EA250_20395, EA410_04885, EA429_13730, EA433_18610, EA434_02545, EA435_20380, EA834_19145, EAI42_08300, EAI52_11005, EB509_04560, EB510_04565, EB515_00165, EBA84_00165, EBJ06_10275, EC3234A_2c01500, EC3426_00920, EC382_02955, ECONIH1_00890, ECs0171, ECTO124_04042, ECTO6_03894, ED225_10455, ED307_13035, ED607_02625, ED611_09635, ED648_00165, ED903_08485, ED944_00165, EEA45_04510, EEP23_00165, EF082_10775, EF173_00165, EG808_13600, EGC26_04060, EGT48_20250, EGU87_00165, EHD45_00165, EHD63_00165, EHJ66_10080, EHV81_01735, EHV90_15890, EHW09_06780, EHX09_00165, EI021_19845, EI028_17525, EI032_14690, EI041_03160, EIA08_06325, EIA21_00165, EIZ93_07925, EL75_3596, EL79_3705, EL80_3652, ELT17_01250, ELT20_04470, ELT22_08875, ELT23_12175, ELT33_15870, ELT48_12180, ELT49_18475, ELT58_11815, ELU82_16775, ELU85_21270, ELU96_20275, ELV00_10925, ELV05_06475, ELV13_13145, ELV15_10275, ELV22_16455, ELV24_19200, ELV28_04185, ELX56_19475, ELX70_19405, ELX76_14550, ELX79_12490, ELX83_20605, ELY23_06765, ELY24_11290, ELY41_06540, ELY48_16915, ELY50_16140, EO241_11800, EPS76_09885, EPS91_15145, EPS94_12740, EPT01_02595, EPU41_00950, EQ820_08895, EQ823_16635, EQ825_22910, EQ830_01905, EQO00_21085, ERL57_05895, ERS085365_03087, ERS085366_02719, ERS085383_01177, ERS085386_01543, ERS085404_00708, ERS085406_00569, ERS085411_00031, ERS085416_03650, ERS139211_02987, ERS150873_01111, EST51_20100, EVY14_15615, EWK56_14885, EXM29_15760, ExPECSC019_03545, ExPECSC038_03990, ExPECSC065_04179, EXX06_08815, EXX13_05315, EXX23_14665, EXX53_06965, EXX55_08280, EXX71_19560, EXX87_03335, EYD11_18540, EYX82_24365, EYX99_20960, EYY27_25445, EYY34_22885, F7F11_02075, F7G01_02645, F7G03_01455, F9040_13535, F9050_00165, F9059_17980, F9B07_03520, F9X20_09355, F9Z74_08200, FAF34_018075, FE846_19735, FKO60_12340, FNJ67_21465, FNJ69_22375, FNJ83_02345, FORC82_3871, FPI65_00925, FQ021_14140, FQU83_21885, FRV13_02390, FV293_02895, FV295_13970, FV438_03735, FY127_02945, FZC17_23565, FZN26_20725, FZN30_04795, G3565_18165, G5603_21760, G5608_21995, G5616_00165, G5675_00165, G5688_15330, G5696_01310, G5697_15860, GFU40_18985, GFU45_18860, GFU47_13780, GHR40_00590, GII91_13045, GIJ01_03570, GIY13_04535, GIY19_11140, GJ11_00885, GJ638_08085, GJD97_22995, GKE15_05200, GKE16_05185, GKE22_02185, GKE24_06260, GKE26_05200, GKE29_08795, GKE31_05160, GKE39_03930, GKE46_02210, GKE53_02210, GKE58_05115, GKE60_05170, GKE64_02210, GKE69_03515, GKE77_05545, GKE79_03920, GKE87_12060, GKE92_14180, GKE93_04110, GKE98_08645, GKF03_12930, GKF21_15805, GKF28_16145, GKF34_15440, GKF39_01190, GKF47_15415, GKF52_14725, GKF74_13200, GKF86_01190, GKF89_14780, GKG08_11265, GKG09_11865, GKG11_12455, GKG12_02120, GKG22_11875, GKG29_11915, GN312_14025, GNZ00_06515, GNZ02_07900, GP662_15455, GP664_18015, GP671_16645, GP678_08070, GP689_18795, GP700_07630, GP711_09530, GP712_03555, GP720_09585, GP727_05960, GP892_07445, GP912_05760, GQA06_13075, GQA23_04980, GQE22_02625, GQE33_20285, GQE34_08855, GQE36_01700, GQE42_12800, GQE47_19150, GQE58_21125, GQE64_01395, GQE68_05070, GQE87_01035, GQE88_09270, GQM13_12620, GQM17_05190, GQM18_05750, GQN33_07395, GQS26_13490, GQY14_02320, GRW05_07695, GRW27_19960, GRW42_18985, GRW57_10410, GRW80_16650, GRW81_09810, GUB08_19160, GUC40_06245, GUI16_06125, GUI33_00165, GZS12_18935, HmCms169_00360, HmCms184_03911, HmCmsJML074_03001, HmCmsJML146_01754, HmCmsJML204_00825, HmCmsJML236_01511, HMPREF3040_02610, MJ49_06195, MS6198_01840, MS8345_00167, NCTC10082_01383, NCTC10089_04076, NCTC10090_02160, NCTC10767_03962, NCTC10963_04191, NCTC10974_04616, NCTC11126_03634, NCTC12650_04328, NCTC12950_04424, NCTC13127_05455, NCTC13148_05196, NCTC13846_03878, NCTC7922_05813, NCTC7927_04507, NCTC7928_04613, NCTC8450_01117, NCTC8500_04546, NCTC8621_04202, NCTC8959_04843, NCTC9007_00459, NCTC9044_03184, NCTC9045_04711, NCTC9050_02026, NCTC9058_02797, NCTC9062_04214, NCTC9117_05053, NCTC9119_04267, NCTC9434_02610, NCTC9701_04378, NCTC9702_04760, NCTC9706_01337, NCTC9777_00472, NCTC9969_04265, PGD_03810, RK56_028000, SAMEA3472044_04157, SAMEA3472047_02498, SAMEA3472056_00973, SAMEA3472080_03752, SAMEA3472090_04487, SAMEA3472108_03201, SAMEA3472110_04513, SAMEA3472112_04653, SAMEA3472147_00380, SAMEA3484427_01375, SAMEA3484429_01106, SAMEA3484434_01147, SAMEA3752372_04458, SAMEA3752557_00874, SAMEA3752559_03712, SAMEA3752620_02090, SAMEA3753097_03905, SAMEA3753164_02433, SAMEA3753300_01863, SK85_00168, SY51_00965, U12A_00178, U14A_00177, UC41_07420, UN91_10580, WQ89_09555, YDC107_3394

Find proteins for C3TPN2 (Escherichia coli)
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S1H557Escherichia coliMutation(s): 0 
Gene Names: rpsA
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S3I208Escherichia coliMutation(s): 0 
Gene Names: rpsC, G4V09_06545, NCTC9094_00425
Find proteins for A0A376HTV6 (Escherichia coli)
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S4J205Escherichia coliMutation(s): 0 
Gene Names: rpsD
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Entity ID: 23
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30S ribosomal protein S5K156Escherichia coliMutation(s): 0 
Gene Names: rpsE
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Entity ID: 24
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30S ribosomal protein S6L104Escherichia coliMutation(s): 0 
Gene Names: rpsF, NCTC8179_00894
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Entity ID: 25
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30S ribosomal protein S7M151Escherichia coliMutation(s): 0 
Gene Names: rpsG
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Entity ID: 26
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30S ribosomal protein S8N129Escherichia coliMutation(s): 0 
Gene Names: rpsH
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Entity ID: 27
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30S ribosomal protein S9O127Escherichia coliMutation(s): 0 
Gene Names: rpsI
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Entity ID: 28
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30S ribosomal protein S10P99Escherichia coliMutation(s): 0 
Gene Names: rpsJ
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Entity ID: 29
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30S ribosomal protein S11Q117Escherichia coliMutation(s): 0 
Gene Names: rpsK
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Entity ID: 30
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30S ribosomal protein S12R124Escherichia coliMutation(s): 0 
Gene Names: rpsL
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Entity ID: 31
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30S ribosomal protein S14S100Escherichia coliMutation(s): 0 
Gene Names: rpsN
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Entity ID: 32
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30S ribosomal protein S15T88Escherichia coliMutation(s): 0 
Gene Names: rpsO
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Entity ID: 33
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30S ribosomal protein S16U82Escherichia coliMutation(s): 0 
Gene Names: rpsP
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Entity ID: 34
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30S ribosomal protein S17V80Escherichia coliMutation(s): 0 
Gene Names: rpsQ
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Entity ID: 35
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30S ribosomal protein S19W83Escherichia coliMutation(s): 0 
Gene Names: rpsS
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Entity ID: 36
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30S ribosomal protein S13X116Escherichia coliMutation(s): 0 
Gene Names: rpsM
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Entity ID: 37
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50S ribosomal protein L11Y141Escherichia coliMutation(s): 0 
Gene Names: rplK
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Entity ID: 38
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50S ribosomal protein L7/L12Z30Escherichia coliMutation(s): 0 
Gene Names: rplL, NCTC10767_00718, NCTC9081_06478
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Entity ID: 40
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50S ribosomal protein L27b76Escherichia coliMutation(s): 0 
Gene Names: rpmA
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Entity ID: 41
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50S ribosomal protein L28c77Escherichia coliMutation(s): 0 
Gene Names: rpmB
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Entity ID: 43
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50S ribosomal protein L29e62Escherichia coliMutation(s): 0 
Gene Names: rpmC
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Entity ID: 44
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50S ribosomal protein L30f58Escherichia coliMutation(s): 0 
Gene Names: rpmD
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Entity ID: 45
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50S ribosomal protein L31g66Escherichia coliMutation(s): 0 
Gene Names: rpmE
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Entity ID: 46
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50S ribosomal protein L2h271Escherichia coliMutation(s): 0 
Gene Names: rplB
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Entity ID: 47
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50S ribosomal protein L32i56Escherichia coliMutation(s): 0 
Gene Names: rpmF
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Entity ID: 48
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50S ribosomal protein L3j209Escherichia coliMutation(s): 0 
Gene Names: rplC
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Entity ID: 49
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50S ribosomal protein L33k52Escherichia coliMutation(s): 0 
Gene Names: rpmG
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Entity ID: 50
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50S ribosomal protein L4l201Escherichia coliMutation(s): 0 
Gene Names: rplD
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Entity ID: 51
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50S ribosomal protein L34m46Escherichia coliMutation(s): 0 
Gene Names: rpmH
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Entity ID: 52
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50S ribosomal protein L5n177Escherichia coliMutation(s): 0 
Gene Names: rplE
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Entity ID: 53
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50S ribosomal protein L35o64Escherichia coliMutation(s): 0 
Gene Names: rpmI
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Entity ID: 54
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50S ribosomal protein L6p175Escherichia coliMutation(s): 0 
Gene Names: rplF
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Entity ID: 55
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50S ribosomal protein L36q38Escherichia coliMutation(s): 0 
Gene Names: rpmJ
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Entity ID: 56
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50S ribosomal protein L9r149Escherichia coliMutation(s): 0 
Gene Names: rplI
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Entity ID: 57
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50S ribosomal protein L13s142Escherichia coliMutation(s): 0 
Gene Names: rplM
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Entity ID: 58
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50S ribosomal protein L14t123Escherichia coliMutation(s): 0 
Gene Names: rplN
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Entity ID: 59
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50S ribosomal protein L15u144Escherichia coliMutation(s): 0 
Gene Names: 
rplO, A8C65_19395, A9R57_24660, ACU57_21045, AM464_09135, AUQ13_22145, BANRA_01932, BANRA_03684, BHS87_18545, BJJ90_02210, BMA87_18510, BON75_18850, BON98_13310, BUE81_25610, BvCms2454_01416, BvCmsHHP001_00334, BvCmsHHP019_04131, BvCmsHHP056_02703, BvCmsKSP026_02554, BvCmsSINP011_02480, BW690_10710, BZL31_22885, C5F72_02595, C5F73_02860, C5N07_23575, C9E25_20065, C9Z39_20710, CA593_09735, CG692_20270, CI693_13520, CI694_01990, CIG45_22410, D0X26_24495, D2185_22985, D3821_17755, D3O91_20305, D3Y67_24390, D4638_19455, D4718_17880, D9C99_17930, D9D20_21995, D9D44_22490, D9G29_15635, D9G69_20945, D9H68_17710, D9J52_19090, D9Z28_15390, DAH37_14685, DBQ99_03415, DJ503_19770, DL326_22310, DNC98_19095, DT034_22410, DTL43_21000, E2119_19640, E2134_21880, E2135_06185, E4A44_21305, E4K51_21490, E4K55_21420, E4K60_18985, E4K61_20025, E5P22_10480, E5P28_20875, EA213_19860, EAI42_04990, EAI52_16365, EC1094V2_354, EC3234A_55c00230, EC3426_04459, ECTO6_00449, ED307_17010, EEP23_17135, EG808_17075, EI021_21030, EI028_20740, EI032_18995, EI041_20035, EIZ93_12470, EL75_0396, EL79_0415, EL80_0407, ELT20_19170, EPT01_19765, ERS085365_03907, ERS085416_03881, ERS139211_03685, ERS150873_04051, EXX71_21335, EYD11_02080, F1E19_19655, F9040_18095, FRV13_20015, FV293_22465, FWK02_06270, G5632_17770, G5688_20025, GHR40_07050, GKF39_20550, GKF74_18130, GKF86_20070, GKF89_18470, GP671_20580, GP689_20785, GP954_00945, GP979_02005, GQE33_22230, GQE34_14255, GQE64_20420, GQM17_19915, GRW05_09060, GRW27_21285, GRW42_19350, GRW57_03540, GRW80_20585, GRW81_21150, NCTC10963_00456, NCTC11022_03475, NCTC11126_02772, NCTC12650_00710, NCTC13216_01351, NCTC9045_00567, NCTC9062_02686, NCTC9117_00757, NCTC9706_02738, PGD_00585, RK56_021420, SAMEA3472047_03862, SAMEA3472080_04748, SAMEA3484427_04887, SAMEA3484429_04875, SAMEA3752559_00346, SAMEA3753300_02227

Find proteins for A0A037Y8L6 (Escherichia coli)
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Entity ID: 60
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50S ribosomal protein L16v136Escherichia coliMutation(s): 0 
Gene Names: rplP
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Entity ID: 61
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50S ribosomal protein L17w119Escherichia coliMutation(s): 0 
Gene Names: rplQ, C6985_20075, NCTC10767_01524, NCTC9081_00927
Find proteins for A0A2T1LEK9 (Escherichia coli)
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Entity ID: 62
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50S ribosomal protein L18x116Escherichia coliMutation(s): 0 
Gene Names: rplR
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Entity ID: 63
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50S ribosomal protein L19y114Escherichia coliMutation(s): 0 
Gene Names: rplS
Find proteins for A0A4P8C2I6 (Escherichia coli O145:NM)
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Entity ID: 64
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50S ribosomal protein L20z117Escherichia coliMutation(s): 0 
Gene Names: rplT
Find proteins for L3CCT0 (Escherichia coli KTE193)
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Entity ID: 6
MoleculeChainsLengthOrganismImage
NT DNA536synthetic construct
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Entity ID: 7
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T DNA627synthetic construct
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Entity ID: 8
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mRNA with 12 nt long spacer729synthetic construct
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Entity ID: 10
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E-site and A-site tRNA (fMet)A, B76Escherichia coli
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Entity ID: 16
MoleculeChainsLengthOrganismImage
16S rRNAD1542Escherichia coli
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Entity ID: 39
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23S rRNAa2904Escherichia coli
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Entity ID: 42
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5S rRNAd120Escherichia coli
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
AE
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
MG
Query on MG
Download Ideal Coordinates CCD File 
AE
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-09-02
    Type: Initial release
  • Version 1.1: 2020-09-16
    Changes: Database references
  • Version 1.2: 2020-09-23
    Changes: Database references