Download MendeleyOmpA-like domain of FopA1 from Francisella tularensis subsp. tularensis SCHU S4
Michalska, K., Skarina, T., Stogios, P.J., Di Leo, R., Savchenko, A., Joachimiak, A.To be published.
6U83
OmpA-like domain of FopA1 from Francisella tularensis subsp. tularensis SCHU S4
- PDB DOI: https://doi.org/10.2210/pdb6U83/pdb
- Classification: PEPTIDE BINDING PROTEIN
- Organism(s): Francisella tularensis subsp. tularensis SCHU S4
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-09-04 Released: 2019-09-18
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.36 Å
- R-Value Free: 0.237
- R-Value Work: 0.207
- R-Value Observed: 0.209
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Outer membrane associated protein | 174 | Francisella tularensis subsp. tularensis SCHU S4 | Mutation(s): 0 Gene Names: fopA1, FTT_0583 |  | |
UniProt | |||||
Find proteins for Q5NH85 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NH85 Go to UniProtKB: Q5NH85 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5NH85 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | B [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | ||
| 1PE Query on 1PE | C [auth A] | PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N |  | ||
| DAL (Subject of Investigation/LOI) Query on DAL | D [auth A] | D-ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-UWTATZPHSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.36 Å
- R-Value Free: 0.237
- R-Value Work: 0.207
- R-Value Observed: 0.209
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/m36u83
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 113.788 | α = 90 |
| b = 134.971 | β = 90 |
| c = 31.206 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
| SBC-Collect | data collection |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-09-18 Deposition Author(s): Michalska, K., Skarina, T., Stogios, P.J., Di Leo, R., Savchenko, A., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700060C |
Revision History (Full details and data files)
- Version 1.0: 2019-09-18
Type: Initial release - Version 1.1: 2019-12-18
Changes: Author supporting evidence - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Refinement description - Version 1.3: 2024-11-13
Changes: Structure summary
