X-Ray Crystal Structure of a Second Generation Peptide Dendrimer in Complex with Pseudomonas aeruginosa Lectin LecB
Baeriswyl, S., Javor, S., Stocker, A., Darbre, T., Reymond, J.-L.(2019) Helv Chim Acta 
Experimental Data Snapshot
Starting Model: experimental
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(2019) Helv Chim Acta 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Fucose-binding lectin | 115 | Pseudomonas aeruginosa | Mutation(s): 0  Gene Names:  lecB, C0044_25260, CAZ10_21840, DT376_00595, DY979_15445, ECC04_10105, EFK27_13700, EGV95_09240, EGY23_15550, IPC669_23070... | ||
UniProt | |||||
Find proteins for Q9HYN5 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HYN5  Go to UniProtKB:  Q9HYN5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9HYN5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SBD8 chain B | 7 | unidentified | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SBD8 chain C | 3 | unidentified | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SBD8 chain D | 6 | unidentified | Mutation(s): 0  | ||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZDC (Subject of Investigation/LOI) Query on ZDC | I [auth C] | 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid C8 H14 O6 YTZUDUWVQZSKNN-OASCRQMUSA-N | |||
CA Query on CA | F [auth A], G [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
NH2 Query on NH2 | H [auth B] | AMINO GROUP H2 N QGZKDVFQNNGYKY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
DPP Query on DPP | B | L-PEPTIDE LINKING | C3 H8 N2 O2 | ALA |
Length ( Å ) | Angle ( ˚ ) |
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a = 106.297 | α = 90 |
b = 106.297 | β = 90 |
c = 57.09 | γ = 120 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
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Swiss National Science Foundation | Switzerland | -- |