6RVO

Multicrystal dataset of thaumatin collected using a multilayer monochromator.

• PDB DOI: https://doi.org/10.2210/pdb6RVO/pdb

• Classification: PLANT PROTEIN
• Organism(s): Thaumatococcus daniellii
• Expression System: Thaumatococcus daniellii
• Mutation(s): No 


• Deposited: 2019-05-31 Released: 2019-06-19 
• Deposition Author(s): Sandy, J., Sanchez-Weatherby, J., Mikolajek, H., Winter, G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.97 Å
• R-Value Free: 0.176 
• R-Value Work: 0.142 
• R-Value Observed: 0.145 

Literature

Protein-to-structure pipeline for ambient-temperature crystallography at VMXi

Mikolajek, H., Sanchez-Weatherby, J., Sandy, J., Gildea, R.G., Campeotto, I., Cheruvara, H., Clarke, J.D., Foster, T., Fujii, S., Paulsen, I.T., Shah, B.S., Hough, M.A.

(2023) IUCrJ 

• DOI: https://doi.org/10.1107/S2052252523003810

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 22.38 kDa 
• Atom Count: 1,704 
• Modelled Residue Count: 206 
• Deposited Residue Count: 207 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thaumatin I	A	207	Thaumatococcus daniellii	Mutation(s): 0
UniProt
Find proteins for P02883 (Thaumatococcus daniellii) Explore P02883  Go to UniProtKB:  P02883

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TLA	B [auth A]	L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.97 Å
• R-Value Free: 0.176 
• R-Value Work: 0.142 
• R-Value Observed: 0.145 
• Space Group: P 4₁ 2₁ 2
• Diffraction Data: https://doi.org/10.5281/zenodo.3236085

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.563	α = 90
b = 58.563	β = 90
c = 151.496	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
DIALS	data reduction
DIALS	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-06-19 
Deposition Author(s): Sandy, J., Sanchez-Weatherby, J., Mikolajek, H., Winter, G.

Revision History  

• Version 1.0: 2019-06-19
  Type: Initial release
  
• Version 1.1: 2019-08-21
  Changes: Data collection
• Version 1.2: 2023-05-17
  Changes: Database references, Refinement description
• Version 1.3: 2024-02-07
  Changes: Data collection, Refinement description