6RAY

D. melanogaster CMG-DNA, State 2A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular Basis for ATP-Hydrolysis-Driven DNA Translocation by the CMG Helicase of the Eukaryotic Replisome.

Eickhoff, P.Kose, H.B.Martino, F.Petojevic, T.Abid Ali, F.Locke, J.Tamberg, N.Nans, A.Berger, J.M.Botchan, M.R.Yardimci, H.Costa, A.

(2019) Cell Rep 28: 2673-2688.e8

  • DOI: https://doi.org/10.1016/j.celrep.2019.07.104
  • Primary Citation of Related Structures:  
    6RAW, 6RAX, 6RAY, 6RAZ

  • PubMed Abstract: 

    In the eukaryotic replisome, DNA unwinding by the Cdc45-MCM-Go-Ichi-Ni-San (GINS) (CMG) helicase requires a hexameric ring-shaped ATPase named minichromosome maintenance (MCM), which spools single-stranded DNA through its central channel. Not all six ATPase sites are required for unwinding; however, the helicase mechanism is unknown. We imaged ATP-hydrolysis-driven translocation of the CMG using cryo-electron microscopy (cryo-EM) and found that the six MCM subunits engage DNA using four neighboring protomers at a time, with ATP binding promoting DNA engagement. Morphing between different helicase states leads us to suggest a non-symmetric hand-over-hand rotary mechanism, explaining the asymmetric requirements of ATPase function around the MCM ring of the CMG. By imaging of a higher-order replisome assembly, we find that the Mrc1-Csm3-Tof1 fork-stabilization complex strengthens the interaction between parental duplex DNA and the CMG at the fork, which might support the coupling between DNA translocation and fork unwinding.


  • Organizational Affiliation

    Macromolecular Machines Laboratory, The Francis Crick Institute, London NW1 1AT, UK.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor Mcm3A [auth 3]819Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm3Mcm3-RACG4206
EC: 3.6.4.12
UniProt
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UniProt GroupQ9XYU1
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor MCM4B [auth 4]866Drosophila melanogasterMutation(s): 0 
Gene Names: dpaCG1616
EC: 3.6.4.12
UniProt
Find proteins for Q26454 (Drosophila melanogaster)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor Mcm7C [auth 7]720Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm7CG4978
EC: 3.6.4.12
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor Mcm6D [auth 6]817Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm6CG4039
EC: 3.6.4.12
UniProt
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor Mcm5E [auth 5]733Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm5CG4082
EC: 3.6.4.12
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
CDC45LF [auth A]575Drosophila melanogasterMutation(s): 0 
Gene Names: 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
IP07275pG [auth H]202Drosophila melanogasterMutation(s): 0 
Gene Names: Psf1CG9187-PADmel\CG9187psf1CG9187Dmel_CG9187
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Probable DNA replication complex GINS protein PSF2H [auth L]203Drosophila melanogasterMutation(s): 0 
Gene Names: Psf2CG18013
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
AT18545pI [auth M]212Drosophila melanogasterMutation(s): 0 
Gene Names: Psf3Dmel\CG2222CG2222Dmel_CG2222
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication complex GINS protein SLD5J [auth N]228Drosophila melanogasterMutation(s): 0 
Gene Names: Sld5anon-WO0172774.61Dmel\CG14549CG14549Dmel_CG14549
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
DNA replication licensing factor Mcm2K [auth 2]887Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm2CG7538
EC: 3.6.4.12
UniProt
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Entity ID: 12
MoleculeChains LengthOrganismImage
DNA (5'-D(P*AP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')L [auth X]13Drosophila melanogaster
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-11
    Type: Initial release
  • Version 1.1: 2019-09-18
    Changes: Data collection, Database references