6RAY

D. melanogaster CMG-DNA, State 2A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular basis for ATP-hydrolysis driven DNA translocation by the CMG helicase of the eukaryotic replisome

Eickhoff, P.Kose, H.Martino, F.Abid Ali, F.Locke, J.Nans, A.Yardimci, H.Costa, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA replication licensing factor Mcm3
3
819Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm3 (Mcm3-RA)
EC: 3.6.4.12
Find proteins for Q9XYU1 (Drosophila melanogaster)
Go to UniProtKB:  Q9XYU1
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
DNA replication licensing factor MCM4
4
866Drosophila melanogasterMutation(s): 0 
Gene Names: dpa
EC: 3.6.4.12
Find proteins for Q26454 (Drosophila melanogaster)
Go to UniProtKB:  Q26454
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
DNA replication licensing factor Mcm7
7
720Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm7
EC: 3.6.4.12
Find proteins for Q9XYU0 (Drosophila melanogaster)
Go to UniProtKB:  Q9XYU0
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
DNA replication licensing factor Mcm6
6
817Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm6
EC: 3.6.4.12
Find proteins for Q9V461 (Drosophila melanogaster)
Go to UniProtKB:  Q9V461
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
DNA replication licensing factor Mcm5
5
733Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm5
EC: 3.6.4.12
Find proteins for Q9VGW6 (Drosophila melanogaster)
Go to UniProtKB:  Q9VGW6
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
CDC45L
A
575Drosophila melanogasterMutation(s): 0 
Gene Names: CDC45L (anon-1Ec, CDC45, Cdc45, cdc45, D, dCDC45, dCDC45L, DmCdc45, Dmel\CG3658, EG:BACR7A4.11)
Find proteins for O96989 (Drosophila melanogaster)
Go to UniProtKB:  O96989
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
IP07275p
H
202Drosophila melanogasterMutation(s): 0 
Gene Names: Psf1 (CG9187-PA, Dmel\CG9187, PSF1, psf1)
Find proteins for Q9W0I7 (Drosophila melanogaster)
Go to UniProtKB:  Q9W0I7
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
Probable DNA replication complex GINS protein PSF2
L
203Drosophila melanogasterMutation(s): 0 
Gene Names: Psf2
Find proteins for Q9VQY9 (Drosophila melanogaster)
Go to UniProtKB:  Q9VQY9
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
AT18545p
M
212Drosophila melanogasterMutation(s): 0 
Gene Names: Psf3 (Dmel\CG2222, PSF3)
Find proteins for Q9W2V7 (Drosophila melanogaster)
Go to UniProtKB:  Q9W2V7
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
DNA replication complex GINS protein SLD5
N
228Drosophila melanogasterMutation(s): 0 
Gene Names: Sld5 (anon-WO0172774.61, Dmel\CG14549, SLD5)
Find proteins for Q9VBI1 (Drosophila melanogaster)
Go to UniProtKB:  Q9VBI1
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
DNA replication licensing factor Mcm2
2
887Drosophila melanogasterMutation(s): 0 
Gene Names: Mcm2
EC: 3.6.4.12
Find proteins for P49735 (Drosophila melanogaster)
Go to UniProtKB:  P49735
Entity ID: 12
MoleculeChainsLengthOrganism
DNA (5'-D(P*AP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')X13Drosophila melanogaster
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

Download SDF File 
Download CCD File 
2, 3, 4, 6
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
ADP
Query on ADP

Download SDF File 
Download CCD File 
5, 7
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.28 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-09-11
    Type: Initial release