6PMP

Crystal structure of a fragment of rat phospholipase Cepsilon EF3-RA1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.236 

wwPDB Validation   3D Report Full Report

Currently 6PMP does not have a validation slider image.


This is version 1.2 of the entry. See complete history


Literature

Structure of phospholipase C epsilon reveals an integrated RA1 domain and previously unidentified regulatory elements.

Rugema, N.Y.Garland-Kuntz, E.E.Sieng, M.Muralidharan, K.Van Camp, M.M.O'Neill, H.Mbongo, W.Selvia, A.F.Marti, A.T.Everly, A.McKenzie, E.Lyon, A.M.

(2020) Commun Biol 3: 445-445

  • DOI: https://doi.org/10.1038/s42003-020-01178-8
  • Primary Citation of Related Structures:  
    6PMP

  • PubMed Abstract: 

    Phospholipase Cε (PLCε) generates lipid-derived second messengers at the plasma and perinuclear membranes in the cardiovascular system. It is activated in response to a wide variety of signals, such as those conveyed by Rap1A and Ras, through a mechanism that involves its C-terminal Ras association (RA) domains (RA1 and RA2). However, the complexity and size of PLCε has hindered its structural and functional analysis. Herein, we report the 2.7 Å crystal structure of the minimal fragment of PLCε that retains basal activity. This structure includes the RA1 domain, which forms extensive interactions with other core domains. A conserved amphipathic helix in the autoregulatory X-Y linker of PLCε is also revealed, which we show modulates activity in vitro and in cells. The studies provide the structural framework for the core of this critical cardiovascular enzyme that will allow for a better understanding of its regulation and roles in disease.


  • Organizational Affiliation

    Department of Chemistry, Purdue University, West Lafayette, 47907, IN, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1
A, B, C, D
818Rattus norvegicusMutation(s): 0 
Gene Names: Plce1Plce
EC: 3.1.4.11
Membrane Entity: Yes 
UniProt
Find proteins for Q99P84 (Rattus norvegicus)
Explore Q99P84 
Go to UniProtKB:  Q99P84
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99P84
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.73 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.236 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 93.572α = 90
b = 127.755β = 101.12
c = 139.337γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
DIALSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report

Currently 6PMP does not have a validation slider image.



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United States1R01HL141076-01
American Heart AssociationUnited States16SDG29930017
American Cancer SocietyUnited StatesIRG-14-190-56

Revision History  (Full details and data files)

  • Version 1.0: 2020-07-08
    Type: Initial release
  • Version 1.1: 2020-08-26
    Changes: Database references
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Refinement description