6PEJ

Structure of sorbitol dehydrogenase from Sinorhizobium meliloti 1021 bound to sorbitol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.197 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Characterization of the sorbitol dehydrogenase SmoS from Sinorhizobium meliloti 1021

Kohlmeier, M.G.Bailey-Elkin, B.A.Mark, B.L.Oresnik, I.J.

(2021) Acta Crystallogr D Biol Crystallogr 77: 380-390


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sorbitol dehydrogenase (L-iditol 2-dehydrogenase)
A, B, C, D
291Sinorhizobium meliloti 1021Mutation(s): 0 
Gene Names: smoSSMc01500
EC: 1.1.1.14
UniProt
Find proteins for Q92N06 (Rhizobium meliloti (strain 1021))
Explore Q92N06 
Go to UniProtKB:  Q92N06
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92N06
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.194 
  • R-Value Observed: 0.197 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.298α = 90
b = 88.298β = 117.39
c = 87.317γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)Canada--

Revision History  (Full details and data files)

  • Version 1.0: 2020-06-24
    Type: Initial release
  • Version 1.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Derived calculations, Structure summary
  • Version 1.2: 2021-03-10
    Changes: Database references, Structure summary
  • Version 1.3: 2023-10-11
    Changes: Data collection, Database references, Refinement description