Crystal structure of triosephosphate isomerase from Schistosoma mansoni in complex with 2PG

Experimental Data Snapshot

  • Resolution: 2.14 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.181 

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Crystal structures of Triosephosphate Isomerases from Taenia solium and Schistosoma mansoni provide insights for vaccine rationale and drug design against helminth parasites.

Jimenez-Sandoval, P.Castro-Torres, E.Gonzalez-Gonzalez, R.Diaz-Quezada, C.Gurrola, M.Camacho-Manriquez, L.D.Leyva-Navarro, L.Brieba, L.G.

(2020) PLoS Negl Trop Dis 14: e0007815-e0007815

  • DOI: https://doi.org/10.1371/journal.pntd.0007815
  • Primary Citation of Related Structures:  
    6OOG, 6OOI

  • PubMed Abstract: 

    Triosephosphate isomerases (TPIs) from Taenia solium (TsTPI) and Schistosoma mansoni (SmTPI) are potential vaccine and drug targets against cysticercosis and schistosomiasis, respectively. This is due to the dependence of parasitic helminths on glycolysis and because those proteins elicit an immune response, presumably due to their surface localization. Here we report the crystal structures of TsTPI and SmTPI in complex with 2-phosphoglyceric acid (2-PGA). Both TPIs fold into a dimeric (β-α)8 barrel in which the dimer interface consists of α-helices 2, 3, and 4, and swapping of loop 3. TPIs from parasitic helminths harbor a region of three amino acids knows as the SXD/E insert (S155 to E157 and S157 to D159 in TsTPI and SmTPI, respectively). This insert is located between α5 and β6 and is proposed to be the main TPI epitope. This region is part of a solvent-exposed 310-helix that folds into a hook-like structure. The crystal structures of TsTPI and SmTPI predicted conformational epitopes that could be used for vaccine design. Surprisingly, the epitopes corresponding to the SXD/E inserts are not the ones with the greatest immunological potential. SmTPI, but not TsTPI, habors a sole solvent exposed cysteine (SmTPI-S230) and alterations in this residue decrease catalysis. The latter suggests that thiol-conjugating agents could be used to target SmTPI. In sum, the crystal structures of SmTPI and TsTPI are a blueprint for targeted schistosomiasis and cysticercosis drug and vaccine development.

  • Organizational Affiliation

    Laboratorio Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Estudios Avanzados del IPN, Irapuato, Guanajuato, México.

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Triosephosphate isomerase
A, B, C, D, E
A, B, C, D, E, F, G, H
256Schistosoma mansoniMutation(s): 0 
Gene Names: TPI
Find proteins for P48501 (Schistosoma mansoni)
Explore P48501 
Go to UniProtKB:  P48501
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP48501
Sequence Annotations
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
Query on PGA

Download Ideal Coordinates CCD File 
BA [auth G]
EA [auth H]
I [auth A]
M [auth B]
Q [auth C]
BA [auth G],
EA [auth H],
I [auth A],
M [auth B],
Q [auth C],
U [auth D],
W [auth E],
Z [auth F]
C2 H5 O6 P
Query on GOL

Download Ideal Coordinates CCD File 
DA [auth H],
P [auth C]
C3 H8 O3
Query on CL

Download Ideal Coordinates CCD File 
AA [auth F]
CA [auth G]
J [auth A]
N [auth B]
R [auth C]
AA [auth F],
CA [auth G],
J [auth A],
N [auth B],
R [auth C],
V [auth D]
Query on NA

Download Ideal Coordinates CCD File 
FA [auth H]
K [auth A]
L [auth A]
O [auth B]
S [auth C]
FA [auth H],
K [auth A],
L [auth A],
O [auth B],
S [auth C],
T [auth C],
X [auth E],
Y [auth E]
Experimental Data & Validation

Experimental Data

  • Resolution: 2.14 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.181 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 108.05α = 90
b = 108.05β = 90
c = 182.72γ = 90
Software Package:
Software NamePurpose
CrystalCleardata collection
Cootmodel building
Aimlessdata reduction

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Consejo Nacional de Ciencia y Tecnologia (CONACYT)MexicoFronteras de la Ciencia 13

Revision History  (Full details and data files)

  • Version 1.0: 2020-01-08
    Type: Initial release
  • Version 1.1: 2020-01-22
    Changes: Database references
  • Version 1.2: 2023-10-11
    Changes: Data collection, Database references, Refinement description