6O60

Crystal structure of GGTase3-FBXL2-SKP1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.503 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Identification of GGTase3: an Ubiquitin Ligase-Targeting Geranylgeranyltransferase

Kuchay, S.Wang, H.Homer, H.Jain, K.Fehrenbacher, N.Philips, M.Zheng, N.Pagano, M.

(2019) Nat.Struct.Mol.Biol. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein prenyltransferase alpha subunit repeat-containing protein 1
A
407Homo sapiensMutation(s): 0 
Gene Names: PTAR1
Find proteins for Q7Z6K3 (Homo sapiens)
Go to Gene View: PTAR1
Go to UniProtKB:  Q7Z6K3
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Geranylgeranyl transferase type-2 subunit beta
B
332Homo sapiensMutation(s): 0 
Gene Names: RABGGTB (GGTB)
EC: 2.5.1.60
Find proteins for P53611 (Homo sapiens)
Go to Gene View: RABGGTB
Go to UniProtKB:  P53611
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
F-box/LRR-repeat protein 2
C
424Homo sapiensMutation(s): 0 
Gene Names: FBXL2 (FBL2, FBL3)
Find proteins for Q9UKC9 (Homo sapiens)
Go to Gene View: FBXL2
Go to UniProtKB:  Q9UKC9
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
S-phase kinase-associated protein 1
D
164Homo sapiensMutation(s): 0 
Gene Names: SKP1 (EMC19, OCP2, SKP1A, TCEB1L)
Find proteins for P63208 (Homo sapiens)
Go to Gene View: SKP1
Go to UniProtKB:  P63208
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.503 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.194 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 86.843α = 90.00
b = 99.318β = 90.00
c = 151.202γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-03-04 
  • Released Date: 2019-06-26 
  • Deposition Author(s): Wang, H., Zheng, N.

Funding OrganizationLocationGrant Number
Howard Hughes Medical InstituteUnited States--

Revision History 

  • Version 1.0: 2019-06-26
    Type: Initial release