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 6LY5 | pdb_00006ly5

Organization and energy transfer in a huge diatom PSI-FCPI supercomplex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.38 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 2.3 of the entry. See complete history. 

Literature

Structural basis for energy transfer in a huge diatom PSI-FCPI supercomplex.

Xu, C., Pi, X., Huang, Y., Han, G., Chen, X., Qin, X., Huang, G., Zhao, S., Yang, Y., Kuang, T., Wang, W., Sui, S.F., Shen, J.R.

(2020) Nat Commun 11: 5081-5081

  • DOI: https://doi.org/10.1038/s41467-020-18867-x
  • Primary Citation Related Structures: 
    6LY5

  • PubMed Abstract: 

    Diatom is an important group of marine algae and contributes to around 20% of the global photosynthetic carbon fixation. Photosystem I (PSI) of diatoms is associated with a large number of fucoxanthin-chlorophyll a/c proteins (FCPIs). We report the structure of PSI-FCPI from a diatom Chaetoceros gracilis at 2.38 Å resolution by single-particle cryo-electron microscopy. PSI-FCPI is a monomeric supercomplex consisting of 12 core and 24 antenna subunits (FCPIs), and 326 chlorophylls a, 34 chlorophylls c, 102 fucoxanthins, 35 diadinoxanthins, 18 β-carotenes and some electron transfer cofactors. Two subunits designated PsaR and PsaS were found in the core, whereas several subunits were lost. The large number of pigments constitute a unique and huge network ensuring efficient energy harvesting, transfer and dissipation. These results provide a firm structural basis for unraveling the mechanisms of light-energy harvesting, transfer and quenching in the diatom PSI-FCPI, and also important clues to evolutionary changes of PSI-LHCI.


  • Organizational Affiliation: 
    • Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, The Chinese Academy of Sciences, Beijing, 100093, China.

Macromolecule Content 

  • Total Structure Weight: 1,277.92 kDa 
  • Atom Count: 81,344 
  • Modeled Residue Count: 6,644 
  • Deposited Residue Count: 7,563 
  • Unique protein chains: 33

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-7168Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B7P2 (Chaetoceros neogracilis)
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UniProt GroupA0A6J4B7P2
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-1223Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A1E7F4Y9 (Fragilariopsis cylindrus CCMP1102)
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-11198Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B024 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-6207Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B112 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-5222Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B3M5 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-8215Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B492 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-4245Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B0A4 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-10203Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Reference Sequence
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-3195Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B150 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-9200Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B2D5 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-13207Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B0S3 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-14229Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B037 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-16306Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B2D8 (Chaetoceros neogracilis)
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-21219Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B7P8 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI
O, P, Q
205Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B125 (Chaetoceros neogracilis)
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Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-24246Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B499 (Chaetoceros neogracilis)
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Entity ID: 17
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-23254Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B7P8 (Chaetoceros neogracilis)
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Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-12207Chaetoceros neogracilisMutation(s): 0 
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Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-17U [auth W],
V [auth X]
198Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for B7FRW2 (Phaeodactylum tricornutum (strain CCAP 1055/1))
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Reference Sequence
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Entity ID: 20
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaAW [auth a]743Chaetoceros neogracilisMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B109 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 21
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaBX [auth b]733Chaetoceros neogracilisMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for A0A6J4B0E7 (Chaetoceros neogracilis)
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Reference Sequence
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Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaCY [auth c]80Chaetoceros neogracilisMutation(s): 0 
EC: 1.97.1.12
Membrane Entity: Yes 
UniProt
Find proteins for P10793 (Pisum sativum)
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Entity ID: 23
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaDZ [auth d]132Chaetoceros neogracilisMutation(s): 0 
UniProt
Find proteins for A5Z2K3 (Glycine max)
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Entity ID: 24
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaEAA [auth e]63Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for E1C9K6 (Pisum sativum)
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Entity ID: 25
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaFBA [auth f]162Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 26
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaICA [auth i]40Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P17227 (Pisum sativum)
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Entity ID: 27
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaJDA [auth j]42Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
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Entity ID: 28
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaLEA [auth l]172Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for A0A6J4B0N3 (Chaetoceros neogracilis)
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Entity ID: 29
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaMFA [auth m]29Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
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Entity ID: 30
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaSGA [auth g]134Chaetoceros neogracilisMutation(s): 0 
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Entity ID: 31
MoleculeChains  Sequence LengthOrganismDetailsImage
PsaRHA [auth h]139Chaetoceros neogracilisMutation(s): 0 
Membrane Entity: Yes 
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Find proteins for A0A6J4B118 (Chaetoceros neogracilis)
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Entity ID: 32
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-2IA [auth U]160Chaetoceros neogracilisMutation(s): 0 
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Entity ID: 33
MoleculeChains  Sequence LengthOrganismDetailsImage
FCPI-19JA [auth V]179Chaetoceros neogracilisMutation(s): 0 
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Reference Sequence

Small Molecules

Ligands 12 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
DGD

Query on DGD



Download:Ideal Coordinates CCD File
BC [auth C],
HU [auth b],
KI [auth L]
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
C51 H96 O15
LDQFLSUQYHBXSX-HXXRYREZSA-N
CLA

Query on CLA



Download:Ideal Coordinates CCD File
AC [auth C]
AF [auth G]
AI [auth K]
AL [auth O]
AM [auth P]
AC [auth C],
AF [auth G],
AI [auth K],
AL [auth O],
AM [auth P],
AO [auth S],
AQ [auth X],
AR [auth a],
AT [auth b],
AV [auth j],
AW [auth U],
BF [auth G],
BG [auth H],
BI [auth K],
BL [auth O],
BM [auth P],
BO [auth S],
BP [auth T],
BQ [auth X],
BR [auth a],
BT [auth b],
BW [auth U],
CE [auth F],
CF [auth G],
CG [auth H],
CI [auth K],
CJ [auth L],
CK [auth N],
CO [auth S],
CP [auth W],
CQ [auth X],
CR [auth a],
CT [auth b],
CW [auth U],
DE [auth F],
DF [auth G],
DG [auth H],
DI [auth K],
DK [auth N],
DL [auth O],
DN [auth R],
DO [auth S],
DQ [auth X],
DR [auth a],
DT [auth b],
DW [auth U],
EB [auth B],
ED [auth E],
EE [auth F],
EF [auth G],
EG [auth H],
EH [auth J],
EK [auth N],
EN [auth R],
EO [auth S],
ER [auth a],
ES [auth a],
ET [auth b],
EV [auth j],
EW [auth U],
FB [auth B],
FE [auth F],
FG [auth H],
FH [auth J],
FI [auth K],
FK [auth N],
FL [auth O],
FN [auth R],
FO [auth S],
FQ [auth X],
FR [auth a],
FT [auth b],
FW [auth U],
GB [auth B],
GD [auth E],
GE [auth F],
GH [auth J],
GI [auth K],
GK [auth N],
GN [auth R],
GQ [auth X],
GR [auth a],
GT [auth b],
GV [auth l],
GW [auth U],
HB [auth B],
HC [auth D],
HD [auth E],
HE [auth F],
HF [auth G],
HH [auth J],
HK [auth N],
HN [auth R],
HO [auth S],
HP [auth W],
HR [auth a],
HT [auth b],
HV [auth l],
IB [auth B],
IC [auth D],
ID [auth E],
IH [auth J],
IK [auth N],
IM [auth Q],
IN [auth R],
IO [auth S],
IP [auth W],
IQ [auth X],
IR [auth a],
IT [auth b],
IW [auth U],
JC [auth D],
JD [auth E],
JE [auth F],
JH [auth J],
JJ [auth M],
JL [auth P],
JM [auth Q],
JN [auth R],
JO [auth S],
JP [auth W],
JQ [auth a],
JR [auth a],
JT [auth b],
JV [auth l],
KB [auth B],
KC [auth D],
KD [auth E],
KE [auth F],
KG [auth I],
KH [auth J],
KJ [auth M],
KK [auth N],
KL [auth P],
KM [auth Q],
KO [auth S],
KP [auth W],
KQ [auth a],
KR [auth a],
KT [auth b],
KV [auth l],
LC [auth D],
LD [auth E],
LG [auth I],
LJ [auth M],
LK [auth N],
LM [auth Q],
LN [auth R],
LO [auth S],
LP [auth W],
LQ [auth a],
LR [auth a],
LS [auth b],
LT [auth b],
LV [auth l],
MC [auth D],
MD [auth E],
MG [auth I],
MH [auth J],
MJ [auth M],
MK [auth N],
MM [auth Q],
MN [auth R],
MP [auth W],
MQ [auth a],
MR [auth a],
MS [auth b],
MT [auth b],
NC [auth D],
ND [auth E],
NG [auth I],
NH [auth J],
NJ [auth M],
NK [auth N],
NM [auth Q],
NN [auth R],
NP [auth W],
NQ [auth a],
NR [auth a],
NT [auth b],
NU [auth f],
OA [auth A],
OC [auth D],
OG [auth I],
OH [auth J],
OJ [auth M],
OK [auth N],
ON [auth R],
OQ [auth a],
OR [auth a],
OT [auth b],
OU [auth f],
PA [auth A],
PG [auth I],
PJ [auth M],
PM [auth Q],
PN [auth R],
PP [auth W],
PQ [auth a],
PR [auth a],
PS [auth b],
PT [auth b],
PU [auth f],
PW [auth V],
QA [auth A],
QC [auth D],
QG [auth I],
QI [auth L],
QL [auth P],
QP [auth W],
QQ [auth a],
QR [auth a],
QS [auth b],
QT [auth b],
QU [auth f],
QW [auth V],
RA [auth A],
RB [auth C],
RC [auth D],
RG [auth I],
RI [auth L],
RJ [auth M],
RL [auth P],
RM [auth Q],
RP [auth W],
RQ [auth a],
RR [auth a],
RS [auth b],
RT [auth b],
RW [auth V],
SA [auth A],
SB [auth C],
SC [auth D],
SF [auth H],
SG [auth I],
SI [auth L],
SJ [auth M],
SL [auth P],
SQ [auth a],
SR [auth a],
SS [auth b],
ST [auth b],
SV [auth h],
SW [auth V],
TA [auth A],
TB [auth C],
TF [auth H],
TG [auth I],
TI [auth L],
TJ [auth M],
TL [auth P],
TO [auth T],
TP [auth W],
TQ [auth a],
TR [auth a],
TS [auth b],
TT [auth b],
TW [auth V],
UA [auth A],
UB [auth C],
UF [auth H],
UI [auth L],
UL [auth P],
UO [auth T],
UQ [auth a],
UR [auth a],
US [auth b],
UT [auth b],
UW [auth V],
VB [auth C],
VE [auth G],
VF [auth H],
VI [auth L],
VK [auth O],
VL [auth P],
VQ [auth a],
VR [auth a],
VS [auth b],
VT [auth b],
VW [auth V],
WA [auth A],
WB [auth C],
WF [auth H],
WI [auth L],
WK [auth O],
WL [auth P],
WO [auth T],
WQ [auth a],
WS [auth b],
WT [auth b],
WU [auth i],
XA [auth A],
XB [auth C],
XE [auth G],
XF [auth H],
XH [auth K],
XK [auth O],
XO [auth T],
XQ [auth a],
XR [auth a],
XS [auth b],
XT [auth b],
XW [auth V],
YB [auth C],
YE [auth G],
YF [auth H],
YH [auth K],
YI [auth L],
YK [auth O],
YL [auth P],
YO [auth T],
YQ [auth a],
YS [auth b],
YT [auth b],
YW [auth V],
ZE [auth G],
ZF [auth H],
ZH [auth K],
ZK [auth O],
ZN [auth S],
ZO [auth T],
ZP [auth X],
ZQ [auth a],
ZS [auth b],
ZT [auth b],
ZU [auth j]
CHLOROPHYLL A
C55 H72 Mg N4 O5
ATNHDLDRLWWWCB-AENOIHSZSA-M
SQD

Query on SQD



Download:Ideal Coordinates CCD File
OS [auth b],
YA [auth A]
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
C41 H78 O12 S
RVUUQPKXGDTQPG-JUDHQOGESA-N
LMG

Query on LMG



Download:Ideal Coordinates CCD File
AX [auth V]
DJ [auth L]
DV [auth j]
IS [auth a]
MF [auth G]
AX [auth V],
DJ [auth L],
DV [auth j],
IS [auth a],
MF [auth G],
NF [auth G],
OD [auth E],
PD [auth E],
PH [auth J],
PV [auth m],
QH [auth J],
UG [auth I],
VC [auth D],
VV [auth h],
WC [auth D],
ZW [auth V]
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
C45 H86 O10
DCLTVZLYPPIIID-CVELTQQQSA-N
LHG

Query on LHG



Download:Ideal Coordinates CCD File
CV [auth j]
GL [auth O]
GS [auth a]
HL [auth O]
IF [auth G]
CV [auth j],
GL [auth O],
GS [auth a],
HL [auth O],
IF [auth G],
IU [auth b],
JF [auth G],
LE [auth F],
ME [auth F],
NV [auth l],
PE [auth G],
QN [auth R],
SD [auth E],
SM [auth Q],
TC [auth D],
TU [auth f],
UC [auth D],
UU [auth f],
VG [auth I],
YR [auth a],
YU [auth i],
ZR [auth a]
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
C38 H75 O10 P
BIABMEZBCHDPBV-MPQUPPDSSA-N
A86

Query on A86



Download:Ideal Coordinates CCD File
AB [auth B]
AE [auth F]
AH [auth J]
AK [auth N]
BD [auth E]
AB [auth B],
AE [auth F],
AH [auth J],
AK [auth N],
BD [auth E],
BJ [auth L],
BK [auth N],
CB [auth B],
CH [auth J],
CN [auth R],
DC [auth D],
DD [auth E],
DH [auth J],
DP [auth W],
EJ [auth M],
EM [auth Q],
EP [auth W],
FJ [auth M],
GG [auth I],
GM [auth Q],
HG [auth I],
HJ [auth M],
HM [auth Q],
HQ [auth X],
IJ [auth M],
IL [auth O],
JG [auth I],
JI [auth L],
LA [auth A],
LL [auth P],
LW [auth V],
MI [auth L],
ML [auth P],
MO [auth T],
MW [auth V],
NO [auth T],
NW [auth V],
OB [auth C],
OF [auth H],
OI [auth L],
OL [auth P],
OO [auth T],
OW [auth V],
PB [auth C],
PI [auth L],
PK [auth N],
PL [auth P],
PO [auth T],
QB [auth C],
QE [auth G],
QK [auth O],
QO [auth T],
RF [auth H],
RH [auth K],
RK [auth O],
RN [auth S],
RO [auth T],
RV [auth h],
SE [auth G],
SH [auth K],
SK [auth O],
SN [auth S],
SO [auth T],
TE [auth G],
TH [auth K],
TM [auth Q],
TN [auth S],
TV [auth h],
UD [auth F],
UE [auth G],
UK [auth O],
UM [auth R],
UN [auth S],
UP [auth X],
VD [auth F],
VM [auth R],
VN [auth S],
VP [auth X],
WH [auth K],
WJ [auth N],
WM [auth R],
WP [auth X],
WV [auth U],
XD [auth F],
XJ [auth N],
XM [auth R],
XP [auth X],
XV [auth U],
YC [auth E],
YD [auth F],
YG [auth J],
YJ [auth N],
YM [auth R],
YN [auth S],
YP [auth X],
YV [auth U],
ZA [auth A],
ZD [auth F],
ZG [auth J],
ZJ [auth N],
ZM [auth R],
ZV [auth U]
(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate
C42 H58 O6
SJWWTRQNNRNTPU-XJUZQKKNSA-N
KC1

Query on KC1



Download:Ideal Coordinates CCD File
AG [auth H]
AP [auth T]
BE [auth F]
CL [auth O]
EI [auth K]
AG [auth H],
AP [auth T],
BE [auth F],
CL [auth O],
EI [auth K],
EL [auth O],
EQ [auth X],
FD [auth E],
FF [auth G],
GF [auth G],
GO [auth S],
HW [auth U],
IE [auth F],
JB [auth B],
JK [auth N],
KN [auth R],
LH [auth J],
OM [auth Q],
OP [auth W],
PC [auth D],
QJ [auth M],
QM [auth Q],
SP [auth W],
UJ [auth M],
VA [auth A],
VJ [auth M],
VO [auth T],
WE [auth G],
WW [auth V],
XI [auth L],
XL [auth P],
ZB [auth C],
ZI [auth L],
ZL [auth P]
Chlorophyll c1
C35 H30 Mg N4 O5
DGNIJJSSARBJSH-QIEHNWLWSA-L
DD6

Query on DD6



Download:Ideal Coordinates CCD File
AD [auth E]
AN [auth R]
BB [auth B]
BH [auth J]
BN [auth R]
AD [auth E],
AN [auth R],
BB [auth B],
BH [auth J],
BN [auth R],
BV [auth j],
CC [auth D],
CD [auth E],
DB [auth B],
EC [auth D],
FC [auth D],
FM [auth Q],
FP [auth W],
FS [auth a],
GC [auth D],
GJ [auth M],
GP [auth W],
IG [auth I],
KA [auth A],
MA [auth A],
NA [auth A],
NB [auth C],
NI [auth L],
NL [auth P],
PF [auth H],
QF [auth H],
RE [auth G],
TK [auth O],
UH [auth K],
VH [auth K],
WD [auth F],
WN [auth S],
XC [auth E],
XN [auth S],
ZC [auth E]
(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
C40 H54 O3
OGHZCSINIMWCSB-WMTIXGNLSA-N
BCR

Query on BCR



Download:Ideal Coordinates CCD File
AS [auth a]
BS [auth a]
BU [auth b]
CS [auth a]
CU [auth b]
AS [auth a],
BS [auth a],
BU [auth b],
CS [auth a],
CU [auth b],
DS [auth a],
DU [auth b],
EU [auth b],
FU [auth b],
FV [auth j],
IV [auth l],
MU [auth f],
MV [auth l],
OV [auth m],
QV [auth h],
RU [auth f],
VU [auth i],
XU [auth i]
BETA-CAROTENE
C40 H56
OENHQHLEOONYIE-JLTXGRSLSA-N
LMT

Query on LMT



Download:Ideal Coordinates CCD File
AJ [auth L]
CM [auth P]
DM [auth P]
GU [auth b]
HI [auth K]
AJ [auth L],
CM [auth P],
DM [auth P],
GU [auth b],
HI [auth K],
HS [auth a],
II [auth K],
JS [auth a],
JU [auth b],
JW [auth U],
KF [auth G],
KS [auth a],
KW [auth U],
LB [auth B],
LF [auth G],
LI [auth L],
MB [auth B],
NE [auth F],
OE [auth F],
QD [auth E],
RD [auth E],
SU [auth f],
TD [auth E],
UV [auth h],
WG [auth I],
XG [auth I]
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
PQN
(Subject of Investigation/LOI)

Query on PQN



Download:Ideal Coordinates CCD File
AU [auth b],
WR [auth a]
PHYLLOQUINONE
C31 H46 O2
MBWXNTAXLNYFJB-NKFFZRIASA-N
SF4
(Subject of Investigation/LOI)

Query on SF4



Download:Ideal Coordinates CCD File
KU [auth c],
LU [auth c],
NS [auth b]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
UNK
Query on UNK
GA [auth g]L-PEPTIDE LINKINGC4 H9 N O2

--

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.38 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-10-21
    Type: Initial release
  • Version 2.0: 2025-04-09
    Changes: Data collection, Database references, Non-polymer description, Structure summary
  • Version 2.1: 2025-09-17
    Changes: Advisory, Data collection, Derived calculations, Structure summary
  • Version 2.2: 2026-08-12
    Type: Remediation
    Reason: Metalloprotein remediation
    Changes: Advisory, Data collection, Derived calculations, Structure summary
  • Version 2.3: 2026-09-16
    Changes: Data collection, Structure summary