Download MendeleyStructure of the SAMD1 SAM domain in another crystal form
Cao, Y., Zhou, Y., Wang, Z.To be published.
6LUK
Crystal structure of the SAMD1 SAM domain in another crystal form
- DOI: 10.2210/pdb6LUK/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2020-01-29 Released: 2021-02-03
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.226
- R-Value Work: 0.185
- R-Value Observed: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Atherin | A, B, C, D, E, F, G, H, | 69 | Homo sapiens | Mutation(s): 0 Gene Names: SAMD1 |  |
Find proteins for Q6SPF0 (Homo sapiens) Explore Q6SPF0 Go to UniProtKB: Q6SPF0 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: Q6SPF0 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A, B, C, D, E, F, G, H, I, K, L, M, N, P, Q, R, S, T | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.226
- R-Value Work: 0.185
- R-Value Observed: 0.187
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.43 | α = 90 |
| b = 182.842 | β = 93.32 |
| c = 66.971 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2020-01-29
- Released Date: 2021-02-03 Deposition Author(s): Cao, Y., Zhou, Y., Wang, Z.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | 31870725 |
| National Natural Science Foundation of China (NSFC) | China | 31570729 |
Revision History (Full details and data files)
- Version 1.0: 2021-02-03
Type: Initial release
