6LUI

Crystal structure of the SAMD1 WH domain and DNA complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.204 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the SAMD1 WH domain and a CpG-containing double stranded DNA complex

Zhou, Y.Cao, Y.Wang, Z.

To be published.

Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Atherin A80Homo sapiensMutation(s): 0 
Gene Names: SAMD1
Find proteins for Q6SPF0 (Homo sapiens)
Explore Q6SPF0 
Go to UniProtKB:  Q6SPF0
NIH Common Fund Data Resources
PHAROS:  Q6SPF0
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*AP*CP*CP*TP*GP*CP*GP*CP*AP*CP*CP*AP*T)-3')B13Homo sapiens
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 3
      MoleculeChainsLengthOrganismImage
      DNA (5'-D(*AP*TP*GP*GP*TP*GP*CP*GP*CP*AP*GP*GP*T)-3')C13Homo sapiens
      Small Molecules
      Modified Residues  1 Unique
      IDChainsTypeFormula2D DiagramParent
      MSE
      Query on MSE
      AL-PEPTIDE LINKINGC5 H11 N O2 SeMET
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 1.78 Å
      • R-Value Free: 0.242 
      • R-Value Work: 0.202 
      • R-Value Observed: 0.204 
      • Space Group: P 32 2 1
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 45.925α = 90
      b = 45.925β = 90
      c = 132.638γ = 120
      Software Package:
      Software NamePurpose
      PHENIXrefinement
      SCALEPACKdata scaling
      PDB_EXTRACTdata extraction
      DENZOdata reduction
      PHENIXphasing

      Structure Validation

      View Full Validation Report



      Entry History & Funding Information

      Deposition Data


      Funding OrganizationLocationGrant Number
      National Natural Science Foundation of China (NSFC)China31870725
      National Natural Science Foundation of China (NSFC)China31570729

      Revision History  (Full details and data files)

      • Version 1.0: 2021-02-03
        Type: Initial release