6LDN

Crystal structure of T.onnurineus Csm5

• PDB DOI: https://doi.org/10.2210/pdb6LDN/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Thermococcus onnurineus NA1
• Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpGUT1
• Mutation(s): No 


• Deposited: 2019-11-22 Released: 2020-11-25 
• Deposition Author(s): Park, K.H., Woo, E.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.263 
• R-Value Work: 0.208 
• R-Value Observed: 0.213 

Literature

Crystal structure of Csm5 subunit of the Type III-A Csm complex at 2.6 Angstroms resolution

Park, K.H., Woo, E.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: native gel electrophoresis

Macromolecule Content

• Total Structure Weight: 45.26 kDa 
• Atom Count: 2,997 
• Modelled Residue Count: 368 
• Deposited Residue Count: 397 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Csm5	A	397	Thermococcus onnurineus NA1	Mutation(s): 0  Gene Names: TON_0897
UniProt
Find proteins for B6YWC2 (Thermococcus onnurineus (strain NA1)) Explore B6YWC2  Go to UniProtKB:  B6YWC2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.263 
• R-Value Work: 0.208 
• R-Value Observed: 0.213 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.473	α = 90
b = 131.072	β = 90
c = 51.913	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2020-11-25 
Deposition Author(s): Park, K.H., Woo, E.J.

Revision History  

• Version 1.0: 2020-11-25
  Type: Initial release