6L9J

Structure of yeast Snf5 and Swi3 subcomplex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.231 

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This is version 1.2 of the entry. See complete history


Literature

Snf5 and Swi3 subcomplex formation is required for SWI/SNF complex function in yeast.

Zhou, H.Chen, G.Dong, C.Zhao, X.Shen, Z.Chen, F.Liu, B.Long, J.

(2020) Biochem Biophys Res Commun 526: 934-940

  • DOI: https://doi.org/10.1016/j.bbrc.2020.03.169
  • Primary Citation of Related Structures:  
    6L9J

  • PubMed Abstract: 

    The SWI/SNF chromatin remodeling complex, which alters nucleosome positions by either evicting histones or sliding nucleosomes on DNA, is highly conserved from yeast to humans, and 20% of all human cancers have mutations in various subunits of the SWI/SNF complex. Here, we reported the crystal structure of the yeast Snf5-Swi3 subcomplex at a resolution of 2.65 Å. Our results showed that the Snf5-Swi3 subcomplex assembles into a heterotrimer with one Snf5 molecule bound to two distinct Swi3 molecules. In addition, we demonstrated that Snf5-Swi3 subcomplex formation is required for SWI/SNF function in yeast. These findings shed light on the important role of the Snf5-Swi3 subcomplex in the assembly and functional integrity of the SWI/SNF complex.


  • Organizational Affiliation

    State Key Laboratory of Medicinal Chemical Biology, Tianjin Key Laboratory of Protein Science, College of Life Sciences, Nankai University, 94 Weijin Road, Tianjin, 300071, China. Electronic address: haozhou@nankai.edu.cn.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SWI/SNF chromatin-remodeling complex subunit SNF5
A, D, G, J
227Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SNF5SWI10TYE4YBR289WYBR2036
UniProt
Find proteins for P18480 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P18480 
Go to UniProtKB:  P18480
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18480
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
SWI/SNF complex subunit SWI3
B, C, E, F, H
B, C, E, F, H, I, K, L
187Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SWI3TYE2YJL176CJ0495
UniProt
Find proteins for P32591 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32591 
Go to UniProtKB:  P32591
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP32591
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.64 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.231 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 205.522α = 90
b = 146.459β = 131.2
c = 154.329γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31670758
National Natural Science Foundation of China (NSFC)China31870750

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-11
    Type: Initial release
  • Version 1.1: 2021-04-14
    Changes: Database references
  • Version 1.2: 2024-03-27
    Changes: Data collection, Database references