6KKJ

Crystal structure of Drug:Proton Antiporter-1 (DHA1) Family SotB, in the inward open conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.38 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.253 

wwPDB Validation 3D Report Full Report



Literature

Structure of transporter at 3.4 Angstroms resolution.

Xiao, Q.J.Deng, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sugar efflux transporterB423Escherichia coli K-12Mutation(s): 0 
Gene Names: sotBydeAb1528JW1521
Find proteins for P31122 (Escherichia coli (strain K12))
Explore P31122 
Go to UniProtKB:  P31122
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BNG
Query on BNG

Download CCD File 
B
nonyl beta-D-glucopyranoside
C15 H30 O6
QFAPUKLCALRPLH-UXXRCYHCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.38 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.253 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.227α = 90
b = 89.15β = 90
c = 90.007γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-07-25 
  • Released Date: 2020-07-29 
  • Deposition Author(s): Xiao, Q.J., Deng, D.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)ChinaYFA052700
National Science Foundation (NSF, China)ChinaJQ007

Revision History 

  • Version 1.0: 2020-07-29
    Type: Initial release