6JP5

Rabbit Cav1.1-Nifedipine Complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular basis for the modulation of L-type voltage-gated Ca2+ channels by antagonistic and agonistic compounds

Zhao, Y.Huang, G.Wu, J.Yan, N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Voltage-dependent L-type calcium channel subunit alpha-1S
A
1873Oryctolagus cuniculusMutation(s): 0 
Gene Names: CACNA1S (CACH1, CACNL1A3)
Find proteins for P07293 (Oryctolagus cuniculus)
Go to Gene View: CACNA1S
Go to UniProtKB:  P07293
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Voltage-dependent calcium channel gamma-1 subunit
E
222Oryctolagus cuniculusMutation(s): 0 
Gene Names: CACNG1 (CACNLG)
Find proteins for P19518 (Oryctolagus cuniculus)
Go to Gene View: CACNG1
Go to UniProtKB:  P19518
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Voltage-dependent calcium channel subunit alpha-2/delta-1
F
1073Oryctolagus cuniculusMutation(s): 0 
Gene Names: CACNA2D1 (CACNL2A, CCHL2A)
Find proteins for P13806 (Oryctolagus cuniculus)
Go to Gene View: CACNA2D1
Go to UniProtKB:  P13806
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Voltage-dependent L-type calcium channel subunit beta-1
B, C
450Oryctolagus cuniculusMutation(s): 0 
Gene Names: CACNB1 (CACNLB1)
Find proteins for P19517 (Oryctolagus cuniculus)
Go to Gene View: CACNB1
Go to UniProtKB:  P19517
Small Molecules
Ligands 7 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PC1
Query on PC1

Download SDF File 
Download CCD File 
A
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
3-SN-PHOSPHATIDYLCHOLINE
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
F
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
C5U
Query on C5U

Download SDF File 
Download CCD File 
A
dimethyl 2,6-dimethyl-4-(2-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate
C17 H18 N2 O6
HYIMSNHJOBLJNT-UHFFFAOYSA-N
 Ligand Interaction
ETA
Query on ETA

Download SDF File 
Download CCD File 
F
ETHANOLAMINE
C2 H7 N O
HZAXFHJVJLSVMW-UHFFFAOYSA-N
 Ligand Interaction
3PE
Query on 3PE

Download SDF File 
Download CCD File 
A
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
3-SN-PHOSPHATIDYLETHANOLAMINE
C41 H82 N O8 P
LVNGJLRDBYCPGB-LDLOPFEMSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, F
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.9 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (China)China2016YFA0500402
Ministry of Science and Technology (China)China2015CB910101
National Natural Science Foundation of ChinaChina31621092
National Natural Science Foundation of ChinaChina31630017
National Institutes of Health/National Institute of General Medical SciencesChinaR01GM130762
National Natural Science Foundation of ChinaChina81861138009

Revision History 

  • Version 1.0: 2019-06-12
    Type: Initial release