Crystal Structures of Branched-Chain Aminotransferase from Pseudomonas sp. UW4

Experimental Data Snapshot

  • Resolution: 1.70 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.183 

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Biochemical and structural characterization of a highly active branched-chain amino acid aminotransferase from Pseudomonas sp. for efficient biosynthesis of chiral amino acids.

Zheng, X.Cui, Y.Li, T.Li, R.Guo, L.Li, D.Wu, B.

(2019) Appl Microbiol Biotechnol 103: 8051-8062

  • DOI: https://doi.org/10.1007/s00253-019-10105-9
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    Aminotransferases (ATs) are important biocatalysts for the synthesis of chiral amines because of their capability of introducing amino group into ketones or keto acids as well as their high enantioselectivity, high regioselectivity. Among all ATs, branched-chain amino acid aminotransferase (BCAT) can use branched-chain amino acids (BCAAs) as substrate, including L -valine, L -leucine, and L -isoleucine, with α-ketoglutarate to form the corresponding α-keto acids and L -glutamate. Alternatively, BCATs have been used for the biosynthesis of unnatural amino acids, such as L -tert-leucine and L -norvaline. In the present study, the BCAT from Pseudomonas sp. (PsBCAT) was cloned and expressed in Escherichia coli for biochemical and structural analyses. The optimal reaction temperature and pH of PsBCAT were 40 °C and 8.5, respectively. PsBCAT exhibited a comparatively broader substrate spectrum and showed remarkably high activity with bulked aliphatic L -amino acids (k cat up to 220 s -1 ). Additionally, PsBCAT had activities with aromatic L -amino acids, L -histidine, L -lysine, and L -threonine. This substrate promiscuity is unique for the BCAT family and could prove useful in industrial applications. To analyze the catalytic mechanism of PsBCAT with the broad substrate spectrum, the crystal structure of PsBCAT was also determined. Based on the determined crystal structure, we found some differences in the organization of the substrate binding cavity, which may influence the substrate specificity of the enzyme. Finally, conjugated with the ornithine aminotransferase (OrnAT) to shift the reaction equilibrium towards the product formation, the coupled system was applied to the asymmetric synthesis of L -tert-leucine and L -norvaline. In summary, the structural and functional characteristics of PsBCAT were analyzed in detail, and this information will be conducive to industrial production of enantiopure chiral amino acids by aminotransferase.

  • Organizational Affiliation

    College of Life Sciences and Technology, Xinjiang University, Urumqi, Xinjiang, 830046, People's Republic of China.

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Branched-chain-amino-acid aminotransferase
A, B
359Pseudomonas sp. UW4Mutation(s): 0 
Gene Names: ilvE2PputUW4_02966
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Resolution: 1.70 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.183 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.825α = 90
b = 95.717β = 90
c = 109.824γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XDSdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-01-01
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description