6IAD

Apo crystal structure of archaeal Methanocaldococcus infernus Elp3 (del1-54)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The Elongator subunit Elp3 is a non-canonical tRNA acetyltransferase.

Lin, T.Y.Abbassi, N.E.H.Zakrzewski, K.Chramiec-Glabik, A.Jemiola-Rzeminska, M.Rozycki, J.Glatt, S.

(2019) Nat Commun 10: 625-625


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone acetyltransferase, ELP3 family
A
483Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME)Mutation(s): 0 
EC: 2.3.1.48
Find proteins for D5VRB9 (Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME))
Go to UniProtKB:  D5VRB9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.197 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 62.970α = 90.00
b = 62.970β = 90.00
c = 248.250γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
XDSdata reduction
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-11-26 
  • Released Date: 2019-02-20 
  • Deposition Author(s): Lin, T.Y., Glatt, S.

Funding OrganizationLocationGrant Number
PolandHoming/2016-2/14
Polish National Science CentrePolandUMO-2015/19/B/NZ1/00343

Revision History 

  • Version 1.0: 2019-02-20
    Type: Initial release