6IA6

Crystal structure of the bacterial Dehalococcoides mccartyi Elp3 with desulfo-CoA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The Elongator subunit Elp3 is a non-canonical tRNA acetyltransferase.

Lin, T.Y.Abbassi, N.E.H.Zakrzewski, K.Chramiec-Glabik, A.Jemiola-Rzeminska, M.Rozycki, J.Glatt, S.

(2019) Nat Commun 10: 625-625


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ELP3 family, ELP3 family
A
450Dehalococcoides mccartyi BTF08Mutation(s): 0 
Gene Names: btf_573
Find proteins for A0A1C7D1B7 (Dehalococcoides mccartyi BTF08)
Go to UniProtKB:  A0A1C7D1B7
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
DCA
Query on DCA

Download SDF File 
Download CCD File 
A
DESULFO-COENZYME A
C21 H36 N7 O16 P3
ILWZMFJBPIYQKW-IBOSZNHHSA-N
 Ligand Interaction
FES
Query on FES

Download SDF File 
Download CCD File 
A
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.223 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 73.540α = 90.00
b = 160.740β = 90.00
c = 92.990γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXrefinement
PHENIXphasing
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-11-26 
  • Released Date: 2019-02-20 
  • Deposition Author(s): Lin, T.Y., Glatt, S.

Funding OrganizationLocationGrant Number
PolandHoming/2016-2/14
PolandUMO-2015/19/B/NZ1/00343

Revision History 

  • Version 1.0: 2019-02-20
    Type: Initial release