Download MendeleyCrystal structures of murine norovirus protruding domain with conjugated bile acid reveal a novel binding pocket.
Kilic, T., Koromyslova, A., Malak, V., Hansman, G.S.To be published.
6H6L
Murine norovirus protruding domain (CW3 strain) in complex with the CD300lf receptor and glycochenodeoxycholate (GCDCA)
- DOI: 10.2210/pdb6H6L/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Murine norovirus 1, Mus musculus
- Expression System: Escherichia coli BL21(DE3), Escherichia coli
- Mutation(s): No
- Deposited: 2018-07-27 Released: 2019-08-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.216
- R-Value Work: 0.189
- R-Value Observed: 0.191
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Capsid protein | A, B, C, D | 303 | Murine norovirus 1 | Mutation(s): 0 |  |
Find proteins for A7U694 (Murine norovirus 1) Explore A7U694 Go to UniProtKB: A7U694 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CHO Query on CHO | A, B, C, D | GLYCOCHENODEOXYCHOLIC ACID C26 H43 N O5 GHCZAUBVMUEKKP-GYPHWSFCSA-N |  | Ligand Interaction | |
| EDO Query on EDO | B | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | A, B, C, D | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | A, B, C, D | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.216
- R-Value Work: 0.189
- R-Value Observed: 0.191
- Space Group: P 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 87 | α = 90 |
| b = 87 | β = 90 |
| c = 276.81 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2018-07-27
- Released Date: 2019-08-14 Deposition Author(s): Kilic, T., Hansman, G.S.
Revision History (Full details and data files)
- Version 1.0: 2019-08-14
Type: Initial release
