6H5L

Kuenenia stuttgartiensis reducing HAO-like protein complex Kustc0457/Kustc0458


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.192 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

A 60-heme reductase complex from an anammox bacterium shows an extended electron transfer pathway.

Dietl, A.Maalcke, W.J.Ferousi, C.Jetten, M.S.M.Kartal, B.Barends, T.R.M.

(2019) Acta Crystallogr D Struct Biol 75: 333-341

  • DOI: https://doi.org/10.1107/S2059798318017473
  • Primary Citation of Related Structures:  
    6H5L

  • PubMed Abstract: 
  • The hydroxylamine oxidoreductase/hydrazine dehydrogenase (HAO/HDH) protein family constitutes an important group of octaheme cytochromes c (OCCs). The majority of these proteins form homotrimers, with their subunits being covalently attached to each other via a rare cross-link between the catalytic heme moiety and a conserved tyrosine residue in an adjacent subunit ...

    The hydroxylamine oxidoreductase/hydrazine dehydrogenase (HAO/HDH) protein family constitutes an important group of octaheme cytochromes c (OCCs). The majority of these proteins form homotrimers, with their subunits being covalently attached to each other via a rare cross-link between the catalytic heme moiety and a conserved tyrosine residue in an adjacent subunit. This covalent cross-link has been proposed to modulate the active-site heme towards oxidative catalysis by distorting the heme plane. In this study, the crystal structure of a stable complex of an HAO homologue (KsHAOr) with its diheme cytochrome c redox partner (KsDH) from the anammox bacterium Kuenenia stuttgartiensis was determined. KsHAOr lacks the tyrosine cross-link and is therefore tuned to reductive catalysis. The molecular model of the KsHAOr-KsDH complex at 2.6 Å resolution shows a heterododecameric (α 6 β 6 ) assembly, which was also shown to be the oligomeric state in solution by analytical ultracentrifugation and multi-angle static light scattering. The 60-heme-containing protein complex reveals a unique extended electron transfer pathway and provides deeper insights into catalysis and electron transfer in reductive OCCs.


    Organizational Affiliation

    Department of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Similar to hydroxylamine oxidoreductase517Candidatus Kuenenia stuttgartiensisMutation(s): 0 
Gene Names: hao_2haoKsCSTR_49490KSMBR1_2163
EC: 1.7.3.4
UniProt
Find proteins for A0A2C9CG41 (Kuenenia stuttgartiensis)
Explore A0A2C9CG41 
Go to UniProtKB:  A0A2C9CG41
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2C9CG41
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Conserved hypothetical cytochrome protein226Candidatus Kuenenia stuttgartiensisMutation(s): 0 
Gene Names: KsCSTR_49500KSMBR1_2162kustc0457
UniProt
Find proteins for Q1PVE1 (Kuenenia stuttgartiensis)
Explore Q1PVE1 
Go to UniProtKB:  Q1PVE1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ1PVE1
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.192 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 140.2α = 90
b = 140.2β = 90
c = 262.11γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
SHARPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-04-10
    Type: Initial release
  • Version 1.1: 2019-04-17
    Changes: Data collection, Database references