6GXX

Fab fragment of an antibody selective for alpha-1-antitrypsin in the native conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Characterisation of a monoclonal antibody conformationally-selective for native alpha-1-antitrypsin

Elliston, E.L.K.Miranda, E.Perez, J.Irving, J.A.Lomas, D.A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
FAB 1D9 heavy chainA [auth H]226Mus musculusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
FAB 1D9 light chainB [auth L]217Mus musculusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download Ideal Coordinates CCD File 
C [auth L]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.103α = 90
b = 85.257β = 90
c = 89.427γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMR/N024842/1
Wellcome TrustUnited KingdomWellcome Trust 4-year PhD Interdisciplinary Programme in Structural, Computational and Chemical Biology
Other privateUnited StatesAlpha-1 Foundation project grant to James Irving
Other privateUnited StatesAlpha-1 Foundation pilot grant to Elena Miranda
Other governmentUnited KingdomUCLH/NIHR Biomedical Research Centre

Revision History  (Full details and data files)

  • Version 1.0: 2019-07-10
    Type: Initial release