6GSA

Core Centromere Binding Factor 3 (CBF3) with monomeric Ndc10


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Insights into Centromere DNA Bending Revealed by the Cryo-EM Structure of the Core Centromere Binding Factor 3 with Ndc10.

Zhang, W.Lukoynova, N.Miah, S.Lucas, J.Vaughan, C.K.

(2018) Cell Rep 24: 744-754

  • DOI: https://doi.org/10.1016/j.celrep.2018.06.068
  • Primary Citation of Related Structures:  
    6FE8, 6GSA

  • PubMed Abstract: 

    The centromere binding factor 3 (CBF3) complex binds the third centromere DNA element in organisms with point centromeres, such as S. cerevisiae. It is an essential complex for assembly of the kinetochore in these organisms, as it facilitates genetic centromere specification and allows association of all other kinetochore components. We determined high-resolution structures of the core complex of CBF3 alone and in association with a monomeric construct of Ndc10, using cryoelectron microscopy (cryo-EM). We identify the DNA-binding site of the complex and present a model in which CBF3 induces a tight bend in centromeric DNA, thus facilitating assembly of the centromeric nucleosome.


  • Organizational Affiliation

    Institute of Structural and Molecular Biology, Birkbeck College, Malet Street, London WC1E 7HX, UK; Institute of Structural and Molecular Biology, University College London, Gower Street, London WC1E 6BT, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere DNA-binding protein complex CBF3 subunit B
A, B
584Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CEP3CBF3CBF3BCSL1YMR168CYM8520.17C
UniProt
Find proteins for P40969 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40969 
Go to UniProtKB:  P40969
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UniProt GroupP40969
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Suppressor of kinetochore protein 1197Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SKP1CBF3DYDR328CD9798.14
UniProt
Find proteins for P52286 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P52286 
Go to UniProtKB:  P52286
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UniProt GroupP52286
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere DNA-binding protein complex CBF3 subunit C519Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CTF13CBF3CYMR094WYM6543.01YM9582.19
UniProt
Find proteins for P35203 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P35203 
Go to UniProtKB:  P35203
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UniProt GroupP35203
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere DNA-binding protein complex CBF3 subunit A562Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CBF2CBF3ACEP2CTF14NDC10YGR140W
UniProt
Find proteins for P32504 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P32504 
Go to UniProtKB:  P32504
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UniProt GroupP32504
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION2.0

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/J007595/1

Revision History  (Full details and data files)

  • Version 1.0: 2018-08-01
    Type: Initial release