6GDJ | pdb_00006gdj

Crystal structure of Mto2 twin-cysteine dimerisation domain

PDB DOI: https://doi.org/10.2210/pdb6GDJ/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Schizosaccharomyces pombe
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2018-04-23 Released: 2019-05-01
Deposition Author(s): Thakur, H.C., Sawin, K.E., Cook, A.G.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.183 (Depositor), 0.180 (DCC)
R-Value Work:
0.152 (Depositor), 0.150 (DCC)
R-Value Observed:
0.154 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Mto2 twin-cysteine dimerisation domain

Thakur, H.C., Sawin, K.E., Cook, A.G.

To be published.

Macromolecule Content

Total Structure Weight: 18.95 kDa
Atom Count: 1,101
Modeled Residue Count: 140
Deposited Residue Count: 176
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mto2	A, B	88	Schizosaccharomyces pombe	Mutation(s): 0 Gene Names: SPBC902.06
UniProt
Find proteins for Q9USP7 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q9USP7 Go to UniProtKB: Q9USP7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9USP7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.183 (Depositor), 0.180 (DCC)
R-Value Work: 0.152 (Depositor), 0.150 (DCC)
R-Value Observed: 0.154 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.704	α = 90
b = 73.704	β = 90
c = 54.363	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-05-01

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	094517/z/10/z

Revision History (Full details and data files)

Version 1.0: 2019-05-01
Type: Initial release
Version 1.1: 2024-05-15
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.