Download MendeleyCrystal Structures of the Single PDZ Domains from GRASP65 and their Interaction with the Golgin GM130
Jurk, C.M., Roske, Y., Heinemann, U.(2018) Croat Chem Acta
6G8Y
Crystal Structures of the Single PDZ Domains from GRASP65 and their Interaction with the Golgin GM130
- PDB DOI: https://doi.org/10.2210/pdb6G8Y/pdb
- Classification: PROTEIN BINDING
- Organism(s): Saccharomyces cerevisiae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-04-10 Released: 2019-04-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.210
- R-Value Work: 0.163
- R-Value Observed: 0.165
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acetylated cis-Golgi protein, involved in ER-to-Golgi transport | 92 | Saccharomyces cerevisiae | Mutation(s): 0 Gene Names: GRH1, SCKG_0028 |  | |
UniProt | |||||
Find proteins for Q04410 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04410 Go to UniProtKB: Q04410 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q04410 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.210
- R-Value Work: 0.163
- R-Value Observed: 0.165
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.443 | α = 90 |
| b = 53.443 | β = 90 |
| c = 50.923 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| Auto-Rickshaw | phasing |
Entry History
Deposition Data
- Released Date: 2019-04-24 Deposition Author(s): Jurk, C.M., Roske, Y., Heinemann, U.
Revision History (Full details and data files)
- Version 1.0: 2019-04-24
Type: Initial release - Version 1.1: 2020-05-06
Changes: Database references - Version 1.2: 2024-05-08
Changes: Data collection, Database references
