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Crystal Structures of the Single PDZ Domains from GRASP65 and their Interaction with the Golgin GM130
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 3.0 M NaCl, 100 mM Bis-Tris, pH 5.5
Crystal Properties Matthews coefficient Solvent content 1.95 37.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.443 α = 90 b = 53.443 β = 90 c = 50.923 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2011-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 35 99.7 0.042 0.999 22.96 6.5 16914
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 99.7 0.74 0.84 2.82 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 26.72 16072 846 99.68 0.16519 0.16285 0.1626 0.21006 0.208 RANDOM 25.042
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.09 -0.17 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.467 r_sphericity_free 21.033 r_dihedral_angle_3_deg 13.323 r_dihedral_angle_4_deg 12.059 r_sphericity_bonded 8.012 r_dihedral_angle_1_deg 6.028 r_long_range_B_refined 5.525 r_long_range_B_other 5.523 r_scangle_other 2.793 r_mcangle_it 2.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.467 r_sphericity_free 21.033 r_dihedral_angle_3_deg 13.323 r_dihedral_angle_4_deg 12.059 r_sphericity_bonded 8.012 r_dihedral_angle_1_deg 6.028 r_long_range_B_refined 5.525 r_long_range_B_other 5.523 r_scangle_other 2.793 r_mcangle_it 2.707 r_mcangle_other 2.704 r_scbond_it 2.478 r_scbond_other 2.478 r_mcbond_other 2.294 r_mcbond_it 2.291 r_rigid_bond_restr 1.882 r_angle_refined_deg 1.452 r_angle_other_deg 0.985 r_chiral_restr 0.095 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 760 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Auto-Rickshaw phasing