6FMB | pdb_00006fmb

Crystal structure of the BEC1054 RNase-like effector from the fungal pathogen Blumeria graminis

• PDB DOI: https://doi.org/10.2210/pdb6FMB/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Blumeria hordei
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-01-30 Released: 2018-06-20 
• Deposition Author(s): Jones, R., Garnett, J., Spanu, P.D., Cota, E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 
  0.176 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.144 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.145 (Depositor) 

Literature

Crystal structure of the BEC1054 RNase-like effector from the fungal pathogen Blumeria graminis

Jones, R., Garnett, J., Spanu, P.D.

(2018) bioRxiv 

• DOI: https://doi.org/10.1101/291427

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 10.78 kDa 
• Atom Count: 861 
• Modeled Residue Count: 98 
• Deposited Residue Count: 98 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CSEP0064 putative effector protein	A	98	Blumeria hordei	Mutation(s): 0  Gene Names: BGHDH14_bgh02874
UniProt
Find proteins for N1JJ94 (Blumeria graminis f. sp. hordei (strain DH14)) Explore N1JJ94  Go to UniProtKB:  N1JJ94

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free:  0.176 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.144 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.145 (Depositor) 

Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.52	α = 90
b = 60.52	β = 90
c = 78.28	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
SHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-06-20 
Deposition Author(s): Jones, R., Garnett, J., Spanu, P.D., Cota, E.

Revision History  

• Version 1.0: 2018-06-20
  Type: Initial release
  
• Version 1.1: 2024-11-20
  Changes: Data collection, Database references, Structure summary