6FMB | pdb_00006fmb

Crystal structure of the BEC1054 RNase-like effector from the fungal pathogen Blumeria graminis

PDB DOI: https://doi.org/10.2210/pdb6FMB/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Blumeria hordei
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-01-30 Released: 2018-06-20
Deposition Author(s): Jones, R., Garnett, J., Spanu, P.D., Cota, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free:
0.176 (Depositor), 0.178 (DCC)
R-Value Work:
0.144 (Depositor), 0.145 (DCC)
R-Value Observed:
0.145 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the BEC1054 RNase-like effector from the fungal pathogen Blumeria graminis

Jones, R., Garnett, J., Spanu, P.D.

(2018) bioRxiv

DOI: https://doi.org/10.1101/291427

Macromolecule Content

Total Structure Weight: 10.78 kDa
Atom Count: 861
Modeled Residue Count: 98
Deposited Residue Count: 98
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CSEP0064 putative effector protein	A	98	Blumeria hordei	Mutation(s): 0 Gene Names: BGHDH14_bgh02874
UniProt
Find proteins for N1JJ94 (Blumeria graminis f. sp. hordei (strain DH14)) Explore N1JJ94 Go to UniProtKB: N1JJ94
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	N1JJ94
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.176 (Depositor), 0.178 (DCC)
R-Value Work: 0.144 (Depositor), 0.145 (DCC)
R-Value Observed: 0.145 (Depositor)

Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.52	α = 90
b = 60.52	β = 90
c = 78.28	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
SHARP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2018-06-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-06-20
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.