6F6Y

Crystal structure of galectin-3 CRD in complex with galactopentaose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.116 
  • R-Value Observed: 0.118 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

Beta-(1-4)-d-galactans: synthesis and binding interactions with galectin-3

Andersen, M.C.F.Boos, I.Kinnaert, C.Awan, S.I.Pedersen, H.L.Kracun, S.K.Lanz, G.Rydahl, M.G.Kjaerulff, L.Hakansson, M.Kimbung, R.Logan, D.T.Gotfredsen, C.H.Willats, W.G.T.Clausen, M.H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Galectin-3A138Homo sapiensMutation(s): 0 
Gene Names: LGALS3MAC2
UniProt & NIH Common Fund Data Resources
Find proteins for P17931 (Homo sapiens)
Explore P17931 
Go to UniProtKB:  P17931
PHAROS:  P17931
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17931
Protein Feature View
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChainsChain Length2D DiagramGlycosylation3D Interactions
beta-D-galactopyranose-(1-4)-beta-D-galactopyranoseB 2N/A Oligosaccharides Interaction
Glycosylation Resources
GlyTouCan:  G08806VI
GlyCosmos:  G08806VI
GlyGen:  G08806VI
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2
IDChainsNameType/Class2D Diagram3D Interactions
PRD_900113
Query on PRD_900113
B4beta-beta-galactobioseOligosaccharide / Metabolism Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.41 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.116 
  • R-Value Observed: 0.118 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 36.06α = 90
b = 58.2β = 90
c = 62.99γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Danish Council for Strategic ResearchDenmarkGlycAct

Revision History  (Full details and data files)

  • Version 1.0: 2018-12-19
    Type: Initial release
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary