6ERD

Crystal structure of a putative acetyltransferase from Bacillus cereus species.

• PDB DOI:  https://doi.org/10.2210/pdb6ERD/pdb

• Classification: TRANSFERASE
• Organism(s): Bacillus cereus ATCC 14579
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2017-10-18 Released: 2018-09-26 
• Deposition Author(s): Silvestre, H.L., Bolanos-Garcia, V.M., Asensio, J.L., Blundell, T.L., Bastida, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.201 
• R-Value Work: 0.164 
• R-Value Observed: 0.166 

Literature

Crystal structure of a putative acetyltransferase from Bacillus cereus species.

Silvestre, H.L., Bolanos-Garcia, V.M., Blundell, T.L., Bastida, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 99 kDa 
• Atom Count: 6,149 
• Modelled Residue Count: 662 
• Deposited Residue Count: 844 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aminoglycoside N6'-acetyltransferase	A, B	211	Bacillus cereus ATCC 14579	Mutation(s): 0  Gene Names: BC_2494 EC: 2.3.1.82
UniProt
Find proteins for Q81D84 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)) Explore Q81D84  Go to UniProtKB:  Q81D84

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Aminoglycoside N6'-acetyltransferase	C, D	211	Bacillus cereus ATCC 14579	Mutation(s): 0  Gene Names: BC_2494 EC: 2.3.1.82
UniProt
Find proteins for Q81D84 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)) Explore Q81D84  Go to UniProtKB:  Q81D84

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	E [auth A], F [auth A], G [auth A], I [auth B], J [auth B], K [auth B], N [auth C], O [auth D]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL	H [auth A], L [auth B], M [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Modified Residues  2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CME	A, B	L-PEPTIDE LINKING	C5 H11 N O3 S2		CYS
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.201 
• R-Value Work: 0.164 
• R-Value Observed: 0.166 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.52	α = 90
b = 84.17	β = 98.49
c = 72.08	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
SCALA	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-09-26 
Deposition Author(s): Silvestre, H.L., Bolanos-Garcia, V.M., Asensio, J.L., Blundell, T.L., Bastida, A.

Revision History  

• Version 1.0: 2018-09-26
  Type: Initial release