6E7O

Crystal structure of deglycosylated human EPDR1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.255 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structures of human lysosomal EPDR1 reveal homology with the superfamily of bacterial lipoprotein transporters.

Wei, Y.Xiong, Z.J.Li, J.Zou, C.Cairo, C.W.Klassen, J.S.Prive, G.G.

(2019) Commun Biol 2: 52-52


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mammalian ependymin-related protein 1
A, B, C, D
194Homo sapiensMutation(s): 0 
Gene Names: EPDR1 (MERP1, UCC1)
Find proteins for Q9UM22 (Homo sapiens)
Go to Gene View: EPDR1
Go to UniProtKB:  Q9UM22
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.278 
  • R-Value Work: 0.255 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 87.805α = 90.00
b = 97.482β = 90.00
c = 189.469γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXphasing
PHENIXrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-07-27 
  • Released Date: 2019-01-23 
  • Deposition Author(s): Wei, Y., Prive, G.G.

Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanada--
Natural Sciences and Engineering Research Council (Canada)Canada--

Revision History 

  • Version 1.0: 2019-01-23
    Type: Initial release
  • Version 1.1: 2019-02-20
    Type: Data collection, Database references