Complex of MBD1-MBD and methylated DNA
Liu, K., Xu, C., Tempel, W., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Min, J., Structural Genomics ConsortiumTo be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Methyl-CpG-binding domain protein 1 | 79 | Homo sapiens | Mutation(s): 0  Gene Names: MBD1, CXXC3, PCM1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UIS9 (Homo sapiens) Explore Q9UIS9  Go to UniProtKB:  Q9UIS9 | |||||
PHAROS:  Q9UIS9 GTEx:  ENSG00000141644  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UIS9 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*CP*CP*AP*AP*(5CM)P*GP*TP*TP*GP*GP*C)-3') | 12 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UNX Query on UNX | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | UNKNOWN ATOM OR ION X |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 28.574 | α = 90 |
b = 74.193 | β = 90 |
c = 138.872 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |